Gene : Seita.1G251900 S. italica v2.2
Defline:  (1 of 135) PF02365 - No apical meristem (NAM) protein (NAM) Genomic Order:  2519
Name:  ? Seita.1G251900 Secondary Identifier:  ? PAC:32694060
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G251900 0.5kb upstream 0.5kb upstream 4402 true scaffold_1: 32727514-32731915 Setaria italica
Seita.1G251900 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 32731416-32731915 Setaria italica
Seita.1G251900 0.5kb downstream 0.5kb downstream 4402 true scaffold_1: 32727014-32731415 Setaria italica
Seita.1G251900 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 32727014-32727513 Setaria italica
Seita.1G251900 1.0kb upstream 1.0kb upstream 4902 true scaffold_1: 32727514-32732415 Setaria italica
Seita.1G251900 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 32731416-32732415 Setaria italica
Seita.1G251900 1.0kb downstream 1.0kb downstream 4902 true scaffold_1: 32726514-32731415 Setaria italica
Seita.1G251900 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 32726514-32727513 Setaria italica
Seita.1G251900 2.0kb upstream 2.0kb upstream 5902 true scaffold_1: 32727514-32733415 Setaria italica
Seita.1G251900 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 32731416-32733415 Setaria italica
Seita.1G251900 2.0kb downstream 2.0kb downstream 5902 true scaffold_1: 32725514-32731415 Setaria italica
Seita.1G251900 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 32725514-32727513 Setaria italica
Seita.1G251900 5.0kb upstream 5.0kb upstream 8902 true scaffold_1: 32727514-32736415 Setaria italica
Seita.1G251900 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 32731416-32736415 Setaria italica
Seita.1G251900 5.0kb downstream 5.0kb downstream 8902 true scaffold_1: 32722514-32731415 Setaria italica
Seita.1G251900 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 32722514-32727513 Setaria italica
Seita.1G251900 10.0kb upstream 10.0kb upstream 13902 true scaffold_1: 32727514-32741415 Setaria italica
Seita.1G251900 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 32731416-32741415 Setaria italica
Seita.1G251900 10.0kb downstream 10.0kb downstream 13902 true scaffold_1: 32717514-32731415 Setaria italica
Seita.1G251900 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 32717514-32727513 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122045953 5273 Angiosperm View MSA
122179036 5267 Panicoideae View MSA
124586215 5269 Grass View MSA
121351431 5274 Embryophyte View MSA
123382163 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.426        
cufflinks 0.112     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.007     Low Low
cufflinks 0.064     Low  
cufflinks 0.185        
cufflinks 0.366        
cufflinks 0.198        
cufflinks 0.588       High
cufflinks 0.24     Low  
cufflinks 0.386        
cufflinks 0.121     Low  
cufflinks 0.253        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.257        
cufflinks 0.233        
cufflinks 0.266        
cufflinks 0.081     Low  
cufflinks 0.004     Low Low
cufflinks 0.32        

0 Strain