Gene : Seita.1G250600 S. italica v2.2
Defline:  (1 of 2) PTHR10641//PTHR10641:SF629 - MYB-LIKE DNA-BINDING PROTEIN MYB Genomic Order:  2506
Name:  ? Seita.1G250600 Secondary Identifier:  ? PAC:32697894
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G250600 0.5kb upstream 0.5kb upstream 3565 true scaffold_1: 32609743-32613307 Setaria italica
Seita.1G250600 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 32609743-32610242 Setaria italica
Seita.1G250600 0.5kb downstream 0.5kb downstream 3565 true scaffold_1: 32610243-32613807 Setaria italica
Seita.1G250600 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 32613308-32613807 Setaria italica
Seita.1G250600 1.0kb upstream 1.0kb upstream 4065 true scaffold_1: 32609243-32613307 Setaria italica
Seita.1G250600 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 32609243-32610242 Setaria italica
Seita.1G250600 1.0kb downstream 1.0kb downstream 4065 true scaffold_1: 32610243-32614307 Setaria italica
Seita.1G250600 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 32613308-32614307 Setaria italica
Seita.1G250600 2.0kb upstream 2.0kb upstream 5065 true scaffold_1: 32608243-32613307 Setaria italica
Seita.1G250600 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 32608243-32610242 Setaria italica
Seita.1G250600 2.0kb downstream 2.0kb downstream 5065 true scaffold_1: 32610243-32615307 Setaria italica
Seita.1G250600 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 32613308-32615307 Setaria italica
Seita.1G250600 5.0kb upstream 5.0kb upstream 8065 true scaffold_1: 32605243-32613307 Setaria italica
Seita.1G250600 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 32605243-32610242 Setaria italica
Seita.1G250600 5.0kb downstream 5.0kb downstream 8065 true scaffold_1: 32610243-32618307 Setaria italica
Seita.1G250600 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 32613308-32618307 Setaria italica
Seita.1G250600 10.0kb upstream 10.0kb upstream 13065 true scaffold_1: 32600243-32613307 Setaria italica
Seita.1G250600 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 32600243-32610242 Setaria italica
Seita.1G250600 10.0kb downstream 10.0kb downstream 13065 true scaffold_1: 32610243-32623307 Setaria italica
Seita.1G250600 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 32613308-32623307 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122198151 5267 Panicoideae View MSA
124579138 5269 Grass View MSA
122049039 5273 Angiosperm View MSA
121311219 5274 Embryophyte View MSA
123348543 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.924       High
cufflinks 1.081        
cufflinks 0.395       Low
cufflinks 0.634       Low
cufflinks 0.675       Low
cufflinks 1.276        
cufflinks 1.272        
cufflinks 1.05        
cufflinks 1.509        
cufflinks 3.612       High
cufflinks 3.795       High
cufflinks 1.474        
cufflinks 2.117        
cufflinks 1.636        
cufflinks 2.711        
cufflinks 0.736       Low
cufflinks 2.363        
cufflinks 0.647       Low
cufflinks 1.495        
cufflinks 3.567       High

0 Strain