Gene : Seita.1G257000 S. italica v2.2
Defline:  (1 of 2) PTHR11941//PTHR11941:SF79 - ENOYL-COA HYDRATASE-RELATED Genomic Order:  2570
Name:  ? Seita.1G257000 Secondary Identifier:  ? PAC:32697778
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica LEU-DEG2-PWY Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G257000 0.5kb upstream 0.5kb upstream 4143 true scaffold_1: 33192074-33196216 Setaria italica
Seita.1G257000 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 33192074-33192573 Setaria italica
Seita.1G257000 0.5kb downstream 0.5kb downstream 4143 true scaffold_1: 33192574-33196716 Setaria italica
Seita.1G257000 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 33196217-33196716 Setaria italica
Seita.1G257000 1.0kb upstream 1.0kb upstream 4643 true scaffold_1: 33191574-33196216 Setaria italica
Seita.1G257000 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 33191574-33192573 Setaria italica
Seita.1G257000 1.0kb downstream 1.0kb downstream 4643 true scaffold_1: 33192574-33197216 Setaria italica
Seita.1G257000 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 33196217-33197216 Setaria italica
Seita.1G257000 2.0kb upstream 2.0kb upstream 5643 true scaffold_1: 33190574-33196216 Setaria italica
Seita.1G257000 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 33190574-33192573 Setaria italica
Seita.1G257000 2.0kb downstream 2.0kb downstream 5643 true scaffold_1: 33192574-33198216 Setaria italica
Seita.1G257000 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 33196217-33198216 Setaria italica
Seita.1G257000 5.0kb upstream 5.0kb upstream 8643 true scaffold_1: 33187574-33196216 Setaria italica
Seita.1G257000 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 33187574-33192573 Setaria italica
Seita.1G257000 5.0kb downstream 5.0kb downstream 8643 true scaffold_1: 33192574-33201216 Setaria italica
Seita.1G257000 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 33196217-33201216 Setaria italica
Seita.1G257000 10.0kb upstream 10.0kb upstream 13643 true scaffold_1: 33182574-33196216 Setaria italica
Seita.1G257000 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 33182574-33192573 Setaria italica
Seita.1G257000 10.0kb downstream 10.0kb downstream 13643 true scaffold_1: 33192574-33206216 Setaria italica
Seita.1G257000 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 33196217-33206216 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122182924 5267 Panicoideae View MSA
124579335 5269 Grass View MSA
122045797 5273 Angiosperm View MSA
121351751 5274 Embryophyte View MSA
123427880 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.299        
cufflinks 4.539        
cufflinks 8.907        
cufflinks 11.142     High High
cufflinks 6.559        
cufflinks 3.57       Low
cufflinks 3.813       Low
cufflinks 7.539        
cufflinks 3.161       Low
cufflinks 11.605       High
cufflinks 8.348        
cufflinks 4.628        
cufflinks 7.318        
cufflinks 9.541        
cufflinks 6.711        
cufflinks 4.433        
cufflinks 5.156        
cufflinks 11.046       High
cufflinks 7.483        
cufflinks 3.843       Low

0 Strain