Gene : Seita.1G259400 S. italica v2.2
Defline:  (1 of 2) PTHR23342 - N-ACETYLGLUTAMATE SYNTHASE Genomic Order:  2594
Name:  ? Seita.1G259400 Secondary Identifier:  ? PAC:32697954
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica ARGSYNBSUB-PWY Setaria italica pathologic  
Sitalica ARGSYN-PWY Setaria italica pathologic  
Sitalica GLUTORN-PWY Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G259400 0.5kb upstream 0.5kb upstream 1505 true scaffold_1: 33354222-33355726 Setaria italica
Seita.1G259400 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 33354222-33354721 Setaria italica
Seita.1G259400 0.5kb downstream 0.5kb downstream 1505 true scaffold_1: 33354722-33356226 Setaria italica
Seita.1G259400 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 33355727-33356226 Setaria italica
Seita.1G259400 1.0kb upstream 1.0kb upstream 2005 true scaffold_1: 33353722-33355726 Setaria italica
Seita.1G259400 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 33353722-33354721 Setaria italica
Seita.1G259400 1.0kb downstream 1.0kb downstream 2005 true scaffold_1: 33354722-33356726 Setaria italica
Seita.1G259400 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 33355727-33356726 Setaria italica
Seita.1G259400 2.0kb upstream 2.0kb upstream 3005 true scaffold_1: 33352722-33355726 Setaria italica
Seita.1G259400 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 33352722-33354721 Setaria italica
Seita.1G259400 2.0kb downstream 2.0kb downstream 3005 true scaffold_1: 33354722-33357726 Setaria italica
Seita.1G259400 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 33355727-33357726 Setaria italica
Seita.1G259400 5.0kb upstream 5.0kb upstream 6005 true scaffold_1: 33349722-33355726 Setaria italica
Seita.1G259400 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 33349722-33354721 Setaria italica
Seita.1G259400 5.0kb downstream 5.0kb downstream 6005 true scaffold_1: 33354722-33360726 Setaria italica
Seita.1G259400 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 33355727-33360726 Setaria italica
Seita.1G259400 10.0kb upstream 10.0kb upstream 11005 true scaffold_1: 33344722-33355726 Setaria italica
Seita.1G259400 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 33344722-33354721 Setaria italica
Seita.1G259400 10.0kb downstream 10.0kb downstream 11005 true scaffold_1: 33354722-33365726 Setaria italica
Seita.1G259400 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 33355727-33365726 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122177701 5267 Panicoideae View MSA
124576008 5269 Grass View MSA
122045485 5273 Angiosperm View MSA
121347525 5274 Embryophyte View MSA
123424020 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.411        
cufflinks 1.071        
cufflinks 0.506       Low
cufflinks 1.33        
cufflinks 0.709        
cufflinks 1.226        
cufflinks 0.571        
cufflinks 1.736        
cufflinks 0.719        
cufflinks 13.681       High
cufflinks 4.34        
cufflinks 5.545        
cufflinks 4.171        
cufflinks 3.741        
cufflinks 4.622        
cufflinks 0.156       Low
cufflinks 7.299       High
cufflinks 0.54       Low
cufflinks 0.679        
cufflinks 8.005       High

0 Strain