Gene : Seita.1G261900 S. italica v2.2
Defline:  (1 of 1) PTHR12774 - PEROXISOMAL FARNESYLATED PROTEIN Genomic Order:  2619
Name:  ? Seita.1G261900 Secondary Identifier:  ? PAC:32694647
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G261900 0.5kb upstream 0.5kb upstream 4240 true scaffold_1: 33609351-33613590 Setaria italica
Seita.1G261900 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 33613091-33613590 Setaria italica
Seita.1G261900 0.5kb downstream 0.5kb downstream 4240 true scaffold_1: 33608851-33613090 Setaria italica
Seita.1G261900 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 33608851-33609350 Setaria italica
Seita.1G261900 1.0kb upstream 1.0kb upstream 4740 true scaffold_1: 33609351-33614090 Setaria italica
Seita.1G261900 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 33613091-33614090 Setaria italica
Seita.1G261900 1.0kb downstream 1.0kb downstream 4740 true scaffold_1: 33608351-33613090 Setaria italica
Seita.1G261900 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 33608351-33609350 Setaria italica
Seita.1G261900 2.0kb upstream 2.0kb upstream 5740 true scaffold_1: 33609351-33615090 Setaria italica
Seita.1G261900 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 33613091-33615090 Setaria italica
Seita.1G261900 2.0kb downstream 2.0kb downstream 5740 true scaffold_1: 33607351-33613090 Setaria italica
Seita.1G261900 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 33607351-33609350 Setaria italica
Seita.1G261900 5.0kb upstream 5.0kb upstream 8740 true scaffold_1: 33609351-33618090 Setaria italica
Seita.1G261900 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 33613091-33618090 Setaria italica
Seita.1G261900 5.0kb downstream 5.0kb downstream 8740 true scaffold_1: 33604351-33613090 Setaria italica
Seita.1G261900 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 33604351-33609350 Setaria italica
Seita.1G261900 10.0kb upstream 10.0kb upstream 13740 true scaffold_1: 33609351-33623090 Setaria italica
Seita.1G261900 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 33613091-33623090 Setaria italica
Seita.1G261900 10.0kb downstream 10.0kb downstream 13740 true scaffold_1: 33599351-33613090 Setaria italica
Seita.1G261900 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 33599351-33609350 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122179184 5267 Panicoideae View MSA
124575947 5269 Grass View MSA
122041599 5273 Angiosperm View MSA
121347207 5274 Embryophyte View MSA
123425980 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.492        
cufflinks 2.631       Low
cufflinks 5.613        
cufflinks 7.818       High
cufflinks 6.723       High
cufflinks 2.72       Low
cufflinks 3.059        
cufflinks 6.023       High
cufflinks 4.355        
cufflinks 5.224        
cufflinks 2.687       Low
cufflinks 3.544        
cufflinks 3.507        
cufflinks 5.664        
cufflinks 3.276        
cufflinks 3.912        
cufflinks 4.159        
cufflinks 4.049        
cufflinks 5.073        
cufflinks 3.104        

0 Strain