Gene : Seita.1G366700 S. italica v2.2
Defline:  (1 of 18) PTHR11165 - SKP1 Genomic Order:  3667
Name:  ? Seita.1G366700 Secondary Identifier:  ? PAC:32697822
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G366700 0.5kb upstream 0.5kb upstream 1602 true scaffold_1: 41424872-41426473 Setaria italica
Seita.1G366700 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 41424872-41425371 Setaria italica
Seita.1G366700 0.5kb downstream 0.5kb downstream 1602 true scaffold_1: 41425372-41426973 Setaria italica
Seita.1G366700 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 41426474-41426973 Setaria italica
Seita.1G366700 1.0kb upstream 1.0kb upstream 2102 true scaffold_1: 41424372-41426473 Setaria italica
Seita.1G366700 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 41424372-41425371 Setaria italica
Seita.1G366700 1.0kb downstream 1.0kb downstream 2102 true scaffold_1: 41425372-41427473 Setaria italica
Seita.1G366700 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 41426474-41427473 Setaria italica
Seita.1G366700 2.0kb upstream 2.0kb upstream 3102 true scaffold_1: 41423372-41426473 Setaria italica
Seita.1G366700 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 41423372-41425371 Setaria italica
Seita.1G366700 2.0kb downstream 2.0kb downstream 3102 true scaffold_1: 41425372-41428473 Setaria italica
Seita.1G366700 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 41426474-41428473 Setaria italica
Seita.1G366700 5.0kb upstream 5.0kb upstream 6102 true scaffold_1: 41420372-41426473 Setaria italica
Seita.1G366700 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 41420372-41425371 Setaria italica
Seita.1G366700 5.0kb downstream 5.0kb downstream 6102 true scaffold_1: 41425372-41431473 Setaria italica
Seita.1G366700 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 41426474-41431473 Setaria italica
Seita.1G366700 10.0kb upstream 10.0kb upstream 11102 true scaffold_1: 41415372-41426473 Setaria italica
Seita.1G366700 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 41415372-41425371 Setaria italica
Seita.1G366700 10.0kb downstream 10.0kb downstream 11102 true scaffold_1: 41425372-41436473 Setaria italica
Seita.1G366700 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 41426474-41436473 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029816 5273 Angiosperm View MSA
122199884 5267 Panicoideae View MSA
124581525 5269 Grass View MSA
121299090 5274 Embryophyte View MSA
123337010 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.349        
cufflinks 0.579       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.025     Low Low
cufflinks 0.068     Low  
cufflinks 0.707       High
cufflinks 0.241        
cufflinks 0.019     Low Low
cufflinks 0.13        
cufflinks 0.479       High
cufflinks 0.279        
cufflinks 0.153        
cufflinks 0.155     Low  
cufflinks 0.077     Low  
cufflinks 0.126        
cufflinks 0.162        
cufflinks 0.123     Low  
cufflinks 0.48       High
cufflinks 0.035     Low Low
cufflinks 0.141        

0 Strain