Gene : Seita.1G369700 S. italica v2.2
Defline:  (1 of 1) PTHR36749:SF1 - F7O18.3 PROTEIN Genomic Order:  3697
Name:  ? Seita.1G369700 Secondary Identifier:  ? PAC:32694532
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G369700 0.5kb upstream 0.5kb upstream 4922 true scaffold_1: 41571050-41575971 Setaria italica
Seita.1G369700 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 41575472-41575971 Setaria italica
Seita.1G369700 0.5kb downstream 0.5kb downstream 4922 true scaffold_1: 41570550-41575471 Setaria italica
Seita.1G369700 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 41570550-41571049 Setaria italica
Seita.1G369700 1.0kb upstream 1.0kb upstream 5422 true scaffold_1: 41571050-41576471 Setaria italica
Seita.1G369700 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 41575472-41576471 Setaria italica
Seita.1G369700 1.0kb downstream 1.0kb downstream 5422 true scaffold_1: 41570050-41575471 Setaria italica
Seita.1G369700 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 41570050-41571049 Setaria italica
Seita.1G369700 2.0kb upstream 2.0kb upstream 6422 true scaffold_1: 41571050-41577471 Setaria italica
Seita.1G369700 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 41575472-41577471 Setaria italica
Seita.1G369700 2.0kb downstream 2.0kb downstream 6422 true scaffold_1: 41569050-41575471 Setaria italica
Seita.1G369700 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 41569050-41571049 Setaria italica
Seita.1G369700 5.0kb upstream 5.0kb upstream 9422 true scaffold_1: 41571050-41580471 Setaria italica
Seita.1G369700 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 41575472-41580471 Setaria italica
Seita.1G369700 5.0kb downstream 5.0kb downstream 9422 true scaffold_1: 41566050-41575471 Setaria italica
Seita.1G369700 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 41566050-41571049 Setaria italica
Seita.1G369700 10.0kb upstream 10.0kb upstream 14422 true scaffold_1: 41571050-41585471 Setaria italica
Seita.1G369700 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 41575472-41585471 Setaria italica
Seita.1G369700 10.0kb downstream 10.0kb downstream 14422 true scaffold_1: 41561050-41575471 Setaria italica
Seita.1G369700 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 41561050-41571049 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122177103 5267 Panicoideae View MSA
124569892 5269 Grass View MSA
122045899 5273 Angiosperm View MSA
121344385 5274 Embryophyte View MSA
123424865 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.953        
cufflinks 7.067       High
cufflinks 4.016        
cufflinks 3.541       Low
cufflinks 3.479       Low
cufflinks 7.421       High
cufflinks 4.982        
cufflinks 4.984        
cufflinks 3.671       Low
cufflinks 4.808        
cufflinks 5.862        
cufflinks 5.088        
cufflinks 7.19       High
cufflinks 4.867        
cufflinks 7.754       High
cufflinks 3.8       Low
cufflinks 6.514        
cufflinks 3.346       Low
cufflinks 4.386        
cufflinks 6.864       High

0 Strain