Gene : Seita.1G373800 S. italica v2.2
Defline:  (1 of 2) PTHR13861 - VACUOLAR ATP SYNTHASE SUBUNIT F Genomic Order:  3738
Name:  ? Seita.1G373800 Secondary Identifier:  ? PAC:32696831
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-7219 Setaria italica pathologic  
Sitalica PWY-7229 Setaria italica pathologic  
Sitalica PWY-841 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G373800 0.5kb upstream 0.5kb upstream 3280 true scaffold_1: 41784863-41788142 Setaria italica
Seita.1G373800 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 41784863-41785362 Setaria italica
Seita.1G373800 0.5kb downstream 0.5kb downstream 3280 true scaffold_1: 41785363-41788642 Setaria italica
Seita.1G373800 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 41788143-41788642 Setaria italica
Seita.1G373800 1.0kb upstream 1.0kb upstream 3780 true scaffold_1: 41784363-41788142 Setaria italica
Seita.1G373800 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 41784363-41785362 Setaria italica
Seita.1G373800 1.0kb downstream 1.0kb downstream 3780 true scaffold_1: 41785363-41789142 Setaria italica
Seita.1G373800 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 41788143-41789142 Setaria italica
Seita.1G373800 2.0kb upstream 2.0kb upstream 4780 true scaffold_1: 41783363-41788142 Setaria italica
Seita.1G373800 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 41783363-41785362 Setaria italica
Seita.1G373800 2.0kb downstream 2.0kb downstream 4780 true scaffold_1: 41785363-41790142 Setaria italica
Seita.1G373800 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 41788143-41790142 Setaria italica
Seita.1G373800 5.0kb upstream 5.0kb upstream 7780 true scaffold_1: 41780363-41788142 Setaria italica
Seita.1G373800 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 41780363-41785362 Setaria italica
Seita.1G373800 5.0kb downstream 5.0kb downstream 7780 true scaffold_1: 41785363-41793142 Setaria italica
Seita.1G373800 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 41788143-41793142 Setaria italica
Seita.1G373800 10.0kb upstream 10.0kb upstream 12780 true scaffold_1: 41775363-41788142 Setaria italica
Seita.1G373800 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 41775363-41785362 Setaria italica
Seita.1G373800 10.0kb downstream 10.0kb downstream 12780 true scaffold_1: 41785363-41798142 Setaria italica
Seita.1G373800 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 41788143-41798142 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122191909 5267 Panicoideae View MSA
124583710 5269 Grass View MSA
122044374 5273 Angiosperm View MSA
121344263 5274 Embryophyte View MSA
123428206 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.026        
cufflinks 9.184        
cufflinks 5.112       Low
cufflinks 6.58        
cufflinks 4.804       Low
cufflinks 7.433        
cufflinks 6.701        
cufflinks 8.937        
cufflinks 5.716        
cufflinks 9.624        
cufflinks 6.978        
cufflinks 8.912        
cufflinks 9.742       High
cufflinks 5.514       Low
cufflinks 9.356        
cufflinks 9.472        
cufflinks 10.753       High
cufflinks 4.298       Low
cufflinks 7.737        
cufflinks 9.618        

0 Strain