Gene : Seita.1G374600 S. italica v2.2
Defline:  (1 of 8) PTHR24365 - TOLL-LIKE RECEPTOR Genomic Order:  3746
Name:  ? Seita.1G374600 Secondary Identifier:  ? PAC:32696975
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G374600 0.5kb upstream 0.5kb upstream 6908 true scaffold_1: 41811022-41817929 Setaria italica
Seita.1G374600 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 41817430-41817929 Setaria italica
Seita.1G374600 0.5kb downstream 0.5kb downstream 6908 true scaffold_1: 41810522-41817429 Setaria italica
Seita.1G374600 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 41810522-41811021 Setaria italica
Seita.1G374600 1.0kb upstream 1.0kb upstream 7408 true scaffold_1: 41811022-41818429 Setaria italica
Seita.1G374600 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 41817430-41818429 Setaria italica
Seita.1G374600 1.0kb downstream 1.0kb downstream 7408 true scaffold_1: 41810022-41817429 Setaria italica
Seita.1G374600 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 41810022-41811021 Setaria italica
Seita.1G374600 2.0kb upstream 2.0kb upstream 8408 true scaffold_1: 41811022-41819429 Setaria italica
Seita.1G374600 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 41817430-41819429 Setaria italica
Seita.1G374600 2.0kb downstream 2.0kb downstream 8408 true scaffold_1: 41809022-41817429 Setaria italica
Seita.1G374600 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 41809022-41811021 Setaria italica
Seita.1G374600 5.0kb upstream 5.0kb upstream 11408 true scaffold_1: 41811022-41822429 Setaria italica
Seita.1G374600 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 41817430-41822429 Setaria italica
Seita.1G374600 5.0kb downstream 5.0kb downstream 11408 true scaffold_1: 41806022-41817429 Setaria italica
Seita.1G374600 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 41806022-41811021 Setaria italica
Seita.1G374600 10.0kb upstream 10.0kb upstream 16408 true scaffold_1: 41811022-41827429 Setaria italica
Seita.1G374600 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 41817430-41827429 Setaria italica
Seita.1G374600 10.0kb downstream 10.0kb downstream 16408 true scaffold_1: 41801022-41817429 Setaria italica
Seita.1G374600 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 41801022-41811021 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122178089 5267 Panicoideae View MSA
124569810 5269 Grass View MSA
122042195 5273 Angiosperm View MSA
123429169 5275 Viridiplantae View MSA
121345842 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.504       High
cufflinks 9.72       High
cufflinks 3.141       Low
cufflinks 2.301       Low
cufflinks 2.159       Low
cufflinks 7.311        
cufflinks 6.219        
cufflinks 5.916        
cufflinks 3.921        
cufflinks 7.571        
cufflinks 9.425       High
cufflinks 5.291        
cufflinks 5.864        
cufflinks 2.663       Low
cufflinks 6.3        
cufflinks 7.251        
cufflinks 5.071        
cufflinks 4.885        
cufflinks 2.767       Low
cufflinks 5.481        

0 Strain