Gene : Seita.J002400 S. italica v2.2
Defline:  (1 of 1) PTHR33399:SF2 - PSBQ-LIKE PROTEIN 2, CHLOROPLASTIC Genomic Order:  9
Name:  ? Seita.J002400 Secondary Identifier:  ? PAC:32701729
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.J002400 0.5kb upstream 0.5kb upstream 1350 true scaffold_11: 69358-70707 Setaria italica
Seita.J002400 0.5kb upstream 0.5kb upstream 500 false scaffold_11: 70208-70707 Setaria italica
Seita.J002400 0.5kb downstream 0.5kb downstream 1350 true scaffold_11: 68858-70207 Setaria italica
Seita.J002400 0.5kb downstream 0.5kb downstream 500 false scaffold_11: 68858-69357 Setaria italica
Seita.J002400 1.0kb upstream 1.0kb upstream 1850 true scaffold_11: 69358-71207 Setaria italica
Seita.J002400 1.0kb upstream 1.0kb upstream 1000 false scaffold_11: 70208-71207 Setaria italica
Seita.J002400 1.0kb downstream 1.0kb downstream 1850 true scaffold_11: 68358-70207 Setaria italica
Seita.J002400 1.0kb downstream 1.0kb downstream 1000 false scaffold_11: 68358-69357 Setaria italica
Seita.J002400 2.0kb upstream 2.0kb upstream 2850 true scaffold_11: 69358-72207 Setaria italica
Seita.J002400 2.0kb upstream 2.0kb upstream 2000 false scaffold_11: 70208-72207 Setaria italica
Seita.J002400 2.0kb downstream 2.0kb downstream 2850 true scaffold_11: 67358-70207 Setaria italica
Seita.J002400 2.0kb downstream 2.0kb downstream 2000 false scaffold_11: 67358-69357 Setaria italica
Seita.J002400 5.0kb upstream 5.0kb upstream 5850 true scaffold_11: 69358-75207 Setaria italica
Seita.J002400 5.0kb upstream 5.0kb upstream 5000 false scaffold_11: 70208-75207 Setaria italica
Seita.J002400 5.0kb downstream 5.0kb downstream 5850 true scaffold_11: 64358-70207 Setaria italica
Seita.J002400 5.0kb downstream 5.0kb downstream 5000 false scaffold_11: 64358-69357 Setaria italica
Seita.J002400 10.0kb upstream 10.0kb upstream 10850 true scaffold_11: 69358-80207 Setaria italica
Seita.J002400 10.0kb upstream 10.0kb upstream 10000 false scaffold_11: 70208-80207 Setaria italica
Seita.J002400 10.0kb downstream 10.0kb downstream 10850 true scaffold_11: 59358-70207 Setaria italica
Seita.J002400 10.0kb downstream 10.0kb downstream 10000 false scaffold_11: 59358-69357 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122183792 5267 Panicoideae View MSA
124579641 5269 Grass View MSA
122046356 5273 Angiosperm View MSA
121310593 5274 Embryophyte View MSA
123348038 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.208        
cufflinks 27.478     High  
cufflinks 31.802     High  
cufflinks 44.544     High  
cufflinks 112.044     High  
cufflinks 24.091     High  
cufflinks 98.069     High  
cufflinks 108.315     High  
cufflinks 120.897     High High
cufflinks 17.044     High  
cufflinks 8.589        
cufflinks 0.039     Low Low
cufflinks 0.891        
cufflinks 37.739     High  
cufflinks 0.08     Low Low
cufflinks 53.236     High  
cufflinks 0.159       Low
cufflinks 4.397        
cufflinks 36.768     High  
cufflinks 0.1     Low Low

0 Strain