Gene : Seita.J009700 S. italica v2.2
Defline:  (1 of 4) PTHR22773:SF89 - NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 2-RELATED Genomic Order:  40
Name:  ? Seita.J009700 Secondary Identifier:  ? PAC:32701685
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-3781 Setaria italica pathologic  
Sitalica PWY-4302 Setaria italica pathologic  
Sitalica PWY-5083 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.J009700 0.5kb upstream 0.5kb upstream 3405 true scaffold_12: 235359-238763 Setaria italica
Seita.J009700 0.5kb upstream 0.5kb upstream 500 false scaffold_12: 238264-238763 Setaria italica
Seita.J009700 0.5kb downstream 0.5kb downstream 3405 true scaffold_12: 234859-238263 Setaria italica
Seita.J009700 0.5kb downstream 0.5kb downstream 500 false scaffold_12: 234859-235358 Setaria italica
Seita.J009700 1.0kb upstream 1.0kb upstream 3905 true scaffold_12: 235359-239263 Setaria italica
Seita.J009700 1.0kb upstream 1.0kb upstream 1000 false scaffold_12: 238264-239263 Setaria italica
Seita.J009700 1.0kb downstream 1.0kb downstream 3905 true scaffold_12: 234359-238263 Setaria italica
Seita.J009700 1.0kb downstream 1.0kb downstream 1000 false scaffold_12: 234359-235358 Setaria italica
Seita.J009700 2.0kb upstream 2.0kb upstream 4905 true scaffold_12: 235359-240263 Setaria italica
Seita.J009700 2.0kb upstream 2.0kb upstream 2000 false scaffold_12: 238264-240263 Setaria italica
Seita.J009700 2.0kb downstream 2.0kb downstream 4905 true scaffold_12: 233359-238263 Setaria italica
Seita.J009700 2.0kb downstream 2.0kb downstream 2000 false scaffold_12: 233359-235358 Setaria italica
Seita.J009700 5.0kb upstream 5.0kb upstream 7905 true scaffold_12: 235359-243263 Setaria italica
Seita.J009700 5.0kb upstream 5.0kb upstream 5000 false scaffold_12: 238264-243263 Setaria italica
Seita.J009700 5.0kb downstream 5.0kb downstream 7905 true scaffold_12: 230359-238263 Setaria italica
Seita.J009700 5.0kb downstream 5.0kb downstream 5000 false scaffold_12: 230359-235358 Setaria italica
Seita.J009700 10.0kb upstream 10.0kb upstream 12905 true scaffold_12: 235359-248263 Setaria italica
Seita.J009700 10.0kb upstream 10.0kb upstream 10000 false scaffold_12: 238264-248263 Setaria italica
Seita.J009700 10.0kb downstream 10.0kb downstream 12905 true scaffold_12: 225359-238263 Setaria italica
Seita.J009700 10.0kb downstream 10.0kb downstream 10000 false scaffold_12: 225359-235358 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122199914 5267 Panicoideae View MSA
124582133 5269 Grass View MSA
122049707 5273 Angiosperm View MSA
121351606 5274 Embryophyte View MSA
123428700 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.544        
cufflinks 0.961        
cufflinks 0.276        
cufflinks 0.345        
cufflinks 0.181       Low
cufflinks 1.4        
cufflinks 0.481        
cufflinks 2.57        
cufflinks 0.533        
cufflinks 36.486     High High
cufflinks 0.954        
cufflinks 1.408        
cufflinks 8.42       High
cufflinks 0.361        
cufflinks 1.499        
cufflinks 0.096     Low Low
cufflinks 2.053        
cufflinks 0.127       Low
cufflinks 0.468        
cufflinks 1.711        

0 Strain