Gene : Seita.J011700 S. italica v2.2
Defline:  (1 of 3) PTHR30371 - SEC-INDEPENDENT PROTEIN TRANSLOCASE PROTEIN TATC Genomic Order:  60
Name:  ? Seita.J011700 Secondary Identifier:  ? PAC:32701634
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.J011700 0.5kb upstream 0.5kb upstream 2249 true scaffold_12: 353533-355781 Setaria italica
Seita.J011700 0.5kb upstream 0.5kb upstream 500 false scaffold_12: 355282-355781 Setaria italica
Seita.J011700 0.5kb downstream 0.5kb downstream 2249 true scaffold_12: 353033-355281 Setaria italica
Seita.J011700 0.5kb downstream 0.5kb downstream 500 false scaffold_12: 353033-353532 Setaria italica
Seita.J011700 1.0kb upstream 1.0kb upstream 2749 true scaffold_12: 353533-356281 Setaria italica
Seita.J011700 1.0kb upstream 1.0kb upstream 1000 false scaffold_12: 355282-356281 Setaria italica
Seita.J011700 1.0kb downstream 1.0kb downstream 2749 true scaffold_12: 352533-355281 Setaria italica
Seita.J011700 1.0kb downstream 1.0kb downstream 1000 false scaffold_12: 352533-353532 Setaria italica
Seita.J011700 2.0kb upstream 2.0kb upstream 3749 true scaffold_12: 353533-357281 Setaria italica
Seita.J011700 2.0kb upstream 2.0kb upstream 2000 false scaffold_12: 355282-357281 Setaria italica
Seita.J011700 2.0kb downstream 2.0kb downstream 3749 true scaffold_12: 351533-355281 Setaria italica
Seita.J011700 2.0kb downstream 2.0kb downstream 2000 false scaffold_12: 351533-353532 Setaria italica
Seita.J011700 5.0kb upstream 5.0kb upstream 6749 true scaffold_12: 353533-360281 Setaria italica
Seita.J011700 5.0kb upstream 5.0kb upstream 5000 false scaffold_12: 355282-360281 Setaria italica
Seita.J011700 5.0kb downstream 5.0kb downstream 6749 true scaffold_12: 348533-355281 Setaria italica
Seita.J011700 5.0kb downstream 5.0kb downstream 5000 false scaffold_12: 348533-353532 Setaria italica
Seita.J011700 10.0kb upstream 10.0kb upstream 6772 true scaffold_12: 353533-360304 Setaria italica
Seita.J011700 10.0kb upstream 10.0kb upstream 5023 false scaffold_12: 355282-360304 Setaria italica
Seita.J011700 10.0kb downstream 10.0kb downstream 11749 true scaffold_12: 343533-355281 Setaria italica
Seita.J011700 10.0kb downstream 10.0kb downstream 10000 false scaffold_12: 343533-353532 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122186717 5267 Panicoideae View MSA
124586172 5269 Grass View MSA
122050391 5273 Angiosperm View MSA
121349421 5274 Embryophyte View MSA
123381301 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.021     Low  
cufflinks 0.027     Low  
cufflinks 0.01     Low  
cufflinks 0.041     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.03     Low  
cufflinks 0.027     Low  
cufflinks 0.007     Low Low
cufflinks 0.009     Low  
cufflinks 7.062       High
cufflinks 0.06     Low  
cufflinks 0.065     Low  
cufflinks 1.197       High
cufflinks 0.014     Low  
cufflinks 0.081     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.028     Low  
cufflinks 0.012     Low  
cufflinks 0.033     Low  
cufflinks 0.058     Low  

0 Strain