Gene : Seita.J014300 S. italica v2.2
Defline:  (1 of 1) PF03118 - Bacterial RNA polymerase, alpha chain C terminal domain (RNA_pol_A_CTD) Genomic Order:  17
Name:  ? Seita.J014300 Secondary Identifier:  ? PAC:32706086
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.J014300 0.5kb upstream 0.5kb upstream 1516 true scaffold_14: 17377-18892 Setaria italica
Seita.J014300 0.5kb upstream 0.5kb upstream 500 false scaffold_14: 18393-18892 Setaria italica
Seita.J014300 0.5kb downstream 0.5kb downstream 1516 true scaffold_14: 16877-18392 Setaria italica
Seita.J014300 0.5kb downstream 0.5kb downstream 500 false scaffold_14: 16877-17376 Setaria italica
Seita.J014300 1.0kb upstream 1.0kb upstream 2016 true scaffold_14: 17377-19392 Setaria italica
Seita.J014300 1.0kb upstream 1.0kb upstream 1000 false scaffold_14: 18393-19392 Setaria italica
Seita.J014300 1.0kb downstream 1.0kb downstream 2016 true scaffold_14: 16377-18392 Setaria italica
Seita.J014300 1.0kb downstream 1.0kb downstream 1000 false scaffold_14: 16377-17376 Setaria italica
Seita.J014300 2.0kb upstream 2.0kb upstream 3016 true scaffold_14: 17377-20392 Setaria italica
Seita.J014300 2.0kb upstream 2.0kb upstream 2000 false scaffold_14: 18393-20392 Setaria italica
Seita.J014300 2.0kb downstream 2.0kb downstream 3016 true scaffold_14: 15377-18392 Setaria italica
Seita.J014300 2.0kb downstream 2.0kb downstream 2000 false scaffold_14: 15377-17376 Setaria italica
Seita.J014300 5.0kb upstream 5.0kb upstream 6016 true scaffold_14: 17377-23392 Setaria italica
Seita.J014300 5.0kb upstream 5.0kb upstream 5000 false scaffold_14: 18393-23392 Setaria italica
Seita.J014300 5.0kb downstream 5.0kb downstream 6016 true scaffold_14: 12377-18392 Setaria italica
Seita.J014300 5.0kb downstream 5.0kb downstream 5000 false scaffold_14: 12377-17376 Setaria italica
Seita.J014300 10.0kb upstream 10.0kb upstream 11016 true scaffold_14: 17377-28392 Setaria italica
Seita.J014300 10.0kb upstream 10.0kb upstream 10000 false scaffold_14: 18393-28392 Setaria italica
Seita.J014300 10.0kb downstream 10.0kb downstream 11016 true scaffold_14: 7377-18392 Setaria italica
Seita.J014300 10.0kb downstream 10.0kb downstream 10000 false scaffold_14: 7377-17376 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121793313 5273 Angiosperm Singleton cluster - no MSA
122052647 5267 Panicoideae Singleton cluster - no MSA
124352564 5269 Grass Singleton cluster - no MSA
121350838 5274 Embryophyte View MSA
123426853 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.994        
cufflinks 0.428       Low
cufflinks 3.269        
cufflinks 2.212        
cufflinks 2.72        
cufflinks 0.235       Low
cufflinks 2.237        
cufflinks 2.3        
cufflinks 2.359        
cufflinks 32.842     High High
cufflinks 4.319        
cufflinks 0.603        
cufflinks 1.058        
cufflinks 1.488        
cufflinks 0.565        
cufflinks 2.484        
cufflinks 0.35       Low
cufflinks 3.347        
cufflinks 2.388        
cufflinks 0.202       Low

0 Strain