Protein Family : DNA-directed RNA polymerase subunit alpha, putative, expressed 121350838

Method ID:  5274 Method Name:  Embryophyte
Sequence Alignment:  View MSA Member Count:  74
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74 Genes

Primary Identifier Defline Organism Name Symbol Length Chromosome Location
ATCG00740 (1 of 1) K03040 - DNA-directed RNA polymerase subunit alpha (rpoA) A. thaliana TAIR10 990   ChrC: 77901-78890
Gorai.004G150700 (1 of 1) PF03118 - Bacterial RNA polymerase, alpha chain C terminal domain (RNA_pol_A_CTD) G. raimondii v2.1 1471   Chr04: 42715868-42717338
Gorai.004G205100 (1 of 1) PF00411//PF01000//PF01193 - Ribosomal protein S11 (Ribosomal_S11) // RNA polymerase Rpb3/RpoA insert domain (RNA_pol_A_bac) // RNA polymerase Rpb3/Rpb11 dimerisation domain (RNA_pol_L) G. raimondii v2.1 1168   Chr04: 53528840-53530007
Gorai.013G106800 (1 of 1) PF00411//PF01000 - Ribosomal protein S11 (Ribosomal_S11) // RNA polymerase Rpb3/RpoA insert domain (RNA_pol_A_bac) G. raimondii v2.1 1164   Chr13: 23045762-23046925
Thecc1EG046399 (1 of 1) K03040 - DNA-directed RNA polymerase subunit alpha (rpoA) T. cacao v1.1 3665   cacao1chloroplast: 81005-84669
Migut.D01434 (1 of 1) PTHR32108:SF0 - DNA-DIRECTED RNA POLYMERASE SUBUNIT ALPHA M. guttatus v2.0 1060   scaffold_4: 7983857-7984916
Araha.11756s0184 (1 of 1) PTHR32108:SF0 - DNA-DIRECTED RNA POLYMERASE SUBUNIT ALPHA A. halleri v1.1 990   Scaffold11756: 274287-275276
Medtr1g070860 (1 of 3) PTHR32108:SF0 - DNA-DIRECTED RNA POLYMERASE SUBUNIT ALPHA M. truncatula Mt4.0v1 912   chr1: 31379235-31380146
Medtr4g051380 (1 of 3) PTHR32108:SF0 - DNA-DIRECTED RNA POLYMERASE SUBUNIT ALPHA M. truncatula Mt4.0v1 1498   chr4: 18339234-18340731
Traes_1BS_6DFE37F47 (1 of 20) PF01000//PF01193//PF03118 - RNA polymerase Rpb3/RpoA insert domain (RNA_pol_A_bac) // RNA polymerase Rpb3/Rpb11 dimerisation domain (RNA_pol_L) // Bacterial RNA polymerase, alpha chain C terminal domain (RNA_pol_A_CTD) T. aestivum v2.2 1528   ta_iwgsc_1bs_v1_3424947: 2587-4114
Traes_1BS_1638411DC (1 of 20) PF01000//PF01193//PF03118 - RNA polymerase Rpb3/RpoA insert domain (RNA_pol_A_bac) // RNA polymerase Rpb3/Rpb11 dimerisation domain (RNA_pol_L) // Bacterial RNA polymerase, alpha chain C terminal domain (RNA_pol_A_CTD) T. aestivum v2.2 1528   ta_iwgsc_1bs_v1_3483406: 11385-12912
Traes_1DS_9572A5433 (1 of 20) PF01000//PF01193//PF03118 - RNA polymerase Rpb3/RpoA insert domain (RNA_pol_A_bac) // RNA polymerase Rpb3/Rpb11 dimerisation domain (RNA_pol_L) // Bacterial RNA polymerase, alpha chain C terminal domain (RNA_pol_A_CTD) T. aestivum v2.2 1528   ta_iwgsc_1ds_v1_1902000: 5638-7165
Traes_2AL_EDD1A0D0B (1 of 20) PF01000//PF01193//PF03118 - RNA polymerase Rpb3/RpoA insert domain (RNA_pol_A_bac) // RNA polymerase Rpb3/Rpb11 dimerisation domain (RNA_pol_L) // Bacterial RNA polymerase, alpha chain C terminal domain (RNA_pol_A_CTD) T. aestivum v2.2 1336   ta_iwgsc_2al_v1_6350058: 5609-6944
Traes_2BL_B8DAC4264 (1 of 5) PF00411//PF01000 - Ribosomal protein S11 (Ribosomal_S11) // RNA polymerase Rpb3/RpoA insert domain (RNA_pol_A_bac) T. aestivum v2.2 1017   ta_iwgsc_2bl_v1_7902750: 434-1450
Traes_2BS_1638411DC (1 of 20) PF01000//PF01193//PF03118 - RNA polymerase Rpb3/RpoA insert domain (RNA_pol_A_bac) // RNA polymerase Rpb3/Rpb11 dimerisation domain (RNA_pol_L) // Bacterial RNA polymerase, alpha chain C terminal domain (RNA_pol_A_CTD) T. aestivum v2.2 1528   ta_iwgsc_2bs_v1_5245417: 1118-2645
Traes_2DL_9572A5433 (1 of 20) PF01000//PF01193//PF03118 - RNA polymerase Rpb3/RpoA insert domain (RNA_pol_A_bac) // RNA polymerase Rpb3/Rpb11 dimerisation domain (RNA_pol_L) // Bacterial RNA polymerase, alpha chain C terminal domain (RNA_pol_A_CTD) T. aestivum v2.2 1528   ta_iwgsc_2dl_v1_9907837: 155-1682
Traes_3B_6DFE37F47 (1 of 20) PF01000//PF01193//PF03118 - RNA polymerase Rpb3/RpoA insert domain (RNA_pol_A_bac) // RNA polymerase Rpb3/Rpb11 dimerisation domain (RNA_pol_L) // Bacterial RNA polymerase, alpha chain C terminal domain (RNA_pol_A_CTD) T. aestivum v2.2 1528   ta_iwgsc_3b_v1_10535981: 2769-4296
Traes_3B_1638411DC (1 of 20) PF01000//PF01193//PF03118 - RNA polymerase Rpb3/RpoA insert domain (RNA_pol_A_bac) // RNA polymerase Rpb3/Rpb11 dimerisation domain (RNA_pol_L) // Bacterial RNA polymerase, alpha chain C terminal domain (RNA_pol_A_CTD) T. aestivum v2.2 1528   ta_iwgsc_3b_v1_10698611: 1017-2544
Traes_4AL_1638411DC (1 of 20) PF01000//PF01193//PF03118 - RNA polymerase Rpb3/RpoA insert domain (RNA_pol_A_bac) // RNA polymerase Rpb3/Rpb11 dimerisation domain (RNA_pol_L) // Bacterial RNA polymerase, alpha chain C terminal domain (RNA_pol_A_CTD) T. aestivum v2.2 1399   ta_iwgsc_4al_v2_7162728: 2-1400
Traes_4AS_1638411DC (1 of 20) PF01000//PF01193//PF03118 - RNA polymerase Rpb3/RpoA insert domain (RNA_pol_A_bac) // RNA polymerase Rpb3/Rpb11 dimerisation domain (RNA_pol_L) // Bacterial RNA polymerase, alpha chain C terminal domain (RNA_pol_A_CTD) T. aestivum v2.2 1399   ta_iwgsc_4as_v2_5949307: 9772-11170
Traes_4BL_1638411DC (1 of 20) PF01000//PF01193//PF03118 - RNA polymerase Rpb3/RpoA insert domain (RNA_pol_A_bac) // RNA polymerase Rpb3/Rpb11 dimerisation domain (RNA_pol_L) // Bacterial RNA polymerase, alpha chain C terminal domain (RNA_pol_A_CTD) T. aestivum v2.2 1528   ta_iwgsc_4bl_v1_7012057: 159-1686
Traes_4BS_1482BFF9F (1 of 20) PF01000//PF01193//PF03118 - RNA polymerase Rpb3/RpoA insert domain (RNA_pol_A_bac) // RNA polymerase Rpb3/Rpb11 dimerisation domain (RNA_pol_L) // Bacterial RNA polymerase, alpha chain C terminal domain (RNA_pol_A_CTD) T. aestivum v2.2 1528   ta_iwgsc_4bs_v1_4866414: 9773-11300
Traes_4DL_1638411DC (1 of 20) PF01000//PF01193//PF03118 - RNA polymerase Rpb3/RpoA insert domain (RNA_pol_A_bac) // RNA polymerase Rpb3/Rpb11 dimerisation domain (RNA_pol_L) // Bacterial RNA polymerase, alpha chain C terminal domain (RNA_pol_A_CTD) T. aestivum v2.2 1308   ta_iwgsc_4dl_v3_14466158: 3-1310
Traes_5AS_6DFE37F47 (1 of 20) PF01000//PF01193//PF03118 - RNA polymerase Rpb3/RpoA insert domain (RNA_pol_A_bac) // RNA polymerase Rpb3/Rpb11 dimerisation domain (RNA_pol_L) // Bacterial RNA polymerase, alpha chain C terminal domain (RNA_pol_A_CTD) T. aestivum v2.2 1528   ta_iwgsc_5as_v1_1552572: 38245-39772
Traes_5BL_1638411DC (1 of 20) PF01000//PF01193//PF03118 - RNA polymerase Rpb3/RpoA insert domain (RNA_pol_A_bac) // RNA polymerase Rpb3/Rpb11 dimerisation domain (RNA_pol_L) // Bacterial RNA polymerase, alpha chain C terminal domain (RNA_pol_A_CTD) T. aestivum v2.2 1528   ta_iwgsc_5bl_v1_10886771: 882-2409
Traes_5DS_1638411DC (1 of 20) PF01000//PF01193//PF03118 - RNA polymerase Rpb3/RpoA insert domain (RNA_pol_A_bac) // RNA polymerase Rpb3/Rpb11 dimerisation domain (RNA_pol_L) // Bacterial RNA polymerase, alpha chain C terminal domain (RNA_pol_A_CTD) T. aestivum v2.2 1528   ta_iwgsc_5ds_v1_2780529: 286-1813
Traes_7BS_6DFE37F47 (1 of 5) PF00411//PF01000 - Ribosomal protein S11 (Ribosomal_S11) // RNA polymerase Rpb3/RpoA insert domain (RNA_pol_A_bac) T. aestivum v2.2 1089   ta_iwgsc_7bs_v1_3066964: 1093-2181
Traes_7DL_A83992EF8 (1 of 20) PF01000//PF01193//PF03118 - RNA polymerase Rpb3/RpoA insert domain (RNA_pol_A_bac) // RNA polymerase Rpb3/Rpb11 dimerisation domain (RNA_pol_L) // Bacterial RNA polymerase, alpha chain C terminal domain (RNA_pol_A_CTD) T. aestivum v2.2 1528   ta_iwgsc_7dl_v1_3327796: 554-2081
Sphfalx0206s0022 (1 of 2) PTHR32108:SF0 - DNA-DIRECTED RNA POLYMERASE SUBUNIT ALPHA S. fallax v0.5 989   super_206: 130845-131833
Seita.J010800 (1 of 5) PTHR32108:SF0 - DNA-DIRECTED RNA POLYMERASE SUBUNIT ALPHA S. italica v2.2 1002   scaffold_12: 289671-290672

74 Members

Protein Name Organism Name Cluster ID Cluster Name Same Organism Count Method ID Method Name
ATCG00740.1 A. thaliana TAIR10 121350838 DNA-directed RNA polymerase subunit alpha, putative, expressed 1 5274 Embryophyte
Gorai.013G106800.1 G. raimondii v2.1 121350838 DNA-directed RNA polymerase subunit alpha, putative, expressed 3 5274 Embryophyte
Gorai.004G150700.1 G. raimondii v2.1 121350838 DNA-directed RNA polymerase subunit alpha, putative, expressed 3 5274 Embryophyte
Gorai.004G205100.1 G. raimondii v2.1 121350838 DNA-directed RNA polymerase subunit alpha, putative, expressed 3 5274 Embryophyte
Thecc1EG046399t1 T. cacao v1.1 121350838 DNA-directed RNA polymerase subunit alpha, putative, expressed 1 5274 Embryophyte
Migut.D01434.1.p M. guttatus v2.0 121350838 DNA-directed RNA polymerase subunit alpha, putative, expressed 1 5274 Embryophyte
Araha.11756s0184.1.p A. halleri v1.1 121350838 DNA-directed RNA polymerase subunit alpha, putative, expressed 1 5274 Embryophyte
Medtr1g070860.1 M. truncatula Mt4.0v1 121350838 DNA-directed RNA polymerase subunit alpha, putative, expressed 2 5274 Embryophyte
Medtr4g051380.1 M. truncatula Mt4.0v1 121350838 DNA-directed RNA polymerase subunit alpha, putative, expressed 2 5274 Embryophyte
Traes_4DL_1638411DC.2 T. aestivum v2.2 121350838 DNA-directed RNA polymerase subunit alpha, putative, expressed 19 5274 Embryophyte
Traes_5AS_6DFE37F47.2 T. aestivum v2.2 121350838 DNA-directed RNA polymerase subunit alpha, putative, expressed 19 5274 Embryophyte
Traes_5BL_1638411DC.2 T. aestivum v2.2 121350838 DNA-directed RNA polymerase subunit alpha, putative, expressed 19 5274 Embryophyte
Traes_5DS_1638411DC.2 T. aestivum v2.2 121350838 DNA-directed RNA polymerase subunit alpha, putative, expressed 19 5274 Embryophyte
Traes_7BS_6DFE37F47.2 T. aestivum v2.2 121350838 DNA-directed RNA polymerase subunit alpha, putative, expressed 19 5274 Embryophyte
Traes_1BS_6DFE37F47.2 T. aestivum v2.2 121350838 DNA-directed RNA polymerase subunit alpha, putative, expressed 19 5274 Embryophyte
Traes_1BS_1638411DC.2 T. aestivum v2.2 121350838 DNA-directed RNA polymerase subunit alpha, putative, expressed 19 5274 Embryophyte
Traes_1DS_9572A5433.2 T. aestivum v2.2 121350838 DNA-directed RNA polymerase subunit alpha, putative, expressed 19 5274 Embryophyte
Traes_2AL_EDD1A0D0B.2 T. aestivum v2.2 121350838 DNA-directed RNA polymerase subunit alpha, putative, expressed 19 5274 Embryophyte
Traes_2BL_B8DAC4264.2 T. aestivum v2.2 121350838 DNA-directed RNA polymerase subunit alpha, putative, expressed 19 5274 Embryophyte
Traes_2BS_1638411DC.2 T. aestivum v2.2 121350838 DNA-directed RNA polymerase subunit alpha, putative, expressed 19 5274 Embryophyte
Traes_2DL_9572A5433.2 T. aestivum v2.2 121350838 DNA-directed RNA polymerase subunit alpha, putative, expressed 19 5274 Embryophyte
Traes_3B_6DFE37F47.2 T. aestivum v2.2 121350838 DNA-directed RNA polymerase subunit alpha, putative, expressed 19 5274 Embryophyte
Traes_3B_1638411DC.2 T. aestivum v2.2 121350838 DNA-directed RNA polymerase subunit alpha, putative, expressed 19 5274 Embryophyte
Traes_4AL_1638411DC.2 T. aestivum v2.2 121350838 DNA-directed RNA polymerase subunit alpha, putative, expressed 19 5274 Embryophyte
Traes_4AS_1638411DC.2 T. aestivum v2.2 121350838 DNA-directed RNA polymerase subunit alpha, putative, expressed 19 5274 Embryophyte
Traes_4BL_1638411DC.2 T. aestivum v2.2 121350838 DNA-directed RNA polymerase subunit alpha, putative, expressed 19 5274 Embryophyte
Traes_4BS_1482BFF9F.2 T. aestivum v2.2 121350838 DNA-directed RNA polymerase subunit alpha, putative, expressed 19 5274 Embryophyte
Traes_7DL_A83992EF8.2 T. aestivum v2.2 121350838 DNA-directed RNA polymerase subunit alpha, putative, expressed 19 5274 Embryophyte
Sphfalx0206s0022.1.p S. fallax v0.5 121350838 DNA-directed RNA polymerase subunit alpha, putative, expressed 1 5274 Embryophyte
Seita.J014300.1.p S. italica v2.2 121350838 DNA-directed RNA polymerase subunit alpha, putative, expressed 3 5274 Embryophyte