Gene : Medtr1g070860 M. truncatula Mt4.0v1
Defline:  (1 of 3) PTHR32108:SF0 - DNA-DIRECTED RNA POLYMERASE SUBUNIT ALPHA Description:  DNA-directed RNA polymerase subunit alpha
Genomic Order:  3777 Name:  ? Medtr1g070860
Secondary Identifier:  ? PAC:31100404
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g070860 0.5kb upstream 0.5kb upstream 1412 true chr1: 31379235-31380646 Medicago truncatula
Medtr1g070860 0.5kb upstream 0.5kb upstream 500 false chr1: 31380147-31380646 Medicago truncatula
Medtr1g070860 0.5kb downstream 0.5kb downstream 1412 true chr1: 31378735-31380146 Medicago truncatula
Medtr1g070860 0.5kb downstream 0.5kb downstream 500 false chr1: 31378735-31379234 Medicago truncatula
Medtr1g070860 1.0kb upstream 1.0kb upstream 1912 true chr1: 31379235-31381146 Medicago truncatula
Medtr1g070860 1.0kb upstream 1.0kb upstream 1000 false chr1: 31380147-31381146 Medicago truncatula
Medtr1g070860 1.0kb downstream 1.0kb downstream 1912 true chr1: 31378235-31380146 Medicago truncatula
Medtr1g070860 1.0kb downstream 1.0kb downstream 1000 false chr1: 31378235-31379234 Medicago truncatula
Medtr1g070860 2.0kb upstream 2.0kb upstream 2912 true chr1: 31379235-31382146 Medicago truncatula
Medtr1g070860 2.0kb upstream 2.0kb upstream 2000 false chr1: 31380147-31382146 Medicago truncatula
Medtr1g070860 2.0kb downstream 2.0kb downstream 2912 true chr1: 31377235-31380146 Medicago truncatula
Medtr1g070860 2.0kb downstream 2.0kb downstream 2000 false chr1: 31377235-31379234 Medicago truncatula
Medtr1g070860 5.0kb upstream 5.0kb upstream 5912 true chr1: 31379235-31385146 Medicago truncatula
Medtr1g070860 5.0kb upstream 5.0kb upstream 5000 false chr1: 31380147-31385146 Medicago truncatula
Medtr1g070860 5.0kb downstream 5.0kb downstream 5912 true chr1: 31374235-31380146 Medicago truncatula
Medtr1g070860 5.0kb downstream 5.0kb downstream 5000 false chr1: 31374235-31379234 Medicago truncatula
Medtr1g070860 10.0kb upstream 10.0kb upstream 10912 true chr1: 31379235-31390146 Medicago truncatula
Medtr1g070860 10.0kb upstream 10.0kb upstream 10000 false chr1: 31380147-31390146 Medicago truncatula
Medtr1g070860 10.0kb downstream 10.0kb downstream 10912 true chr1: 31369235-31380146 Medicago truncatula
Medtr1g070860 10.0kb downstream 10.0kb downstream 10000 false chr1: 31369235-31379234 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029214 5273 Angiosperm View MSA
122257318 5265 Fabidae Singleton cluster - no MSA
123998885 5270 Rosid Singleton cluster - no MSA
123750855 5271 Pentapetalae View MSA
122773847 5272 Eudicot View MSA
121350838 5274 Embryophyte View MSA
123426853 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.035     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain