Protein Family : RNA polymerase subunit alpha 123750855

Method ID:  5271 Method Name:  Pentapetalae
Sequence Alignment:  View MSA Member Count:  28

28 Genes

Primary Identifier Defline Organism Name Symbol Length Chromosome Location
ATCG00740 (1 of 1) K03040 - DNA-directed RNA polymerase subunit alpha (rpoA) A. thaliana TAIR10 990   ChrC: 77901-78890
Gorai.013G106800 (1 of 1) PF00411//PF01000 - Ribosomal protein S11 (Ribosomal_S11) // RNA polymerase Rpb3/RpoA insert domain (RNA_pol_A_bac) G. raimondii v2.1 1164   Chr13: 23045762-23046925
Thecc1EG046399 (1 of 1) K03040 - DNA-directed RNA polymerase subunit alpha (rpoA) T. cacao v1.1 3665   cacao1chloroplast: 81005-84669
Migut.D01434 (1 of 1) PTHR32108:SF0 - DNA-DIRECTED RNA POLYMERASE SUBUNIT ALPHA M. guttatus v2.0 1060   scaffold_4: 7983857-7984916
Araha.11756s0184 (1 of 1) PTHR32108:SF0 - DNA-DIRECTED RNA POLYMERASE SUBUNIT ALPHA A. halleri v1.1 990   Scaffold11756: 274287-275276
Medtr1g070860 (1 of 3) PTHR32108:SF0 - DNA-DIRECTED RNA POLYMERASE SUBUNIT ALPHA M. truncatula Mt4.0v1 912   chr1: 31379235-31380146
Medtr4g051380 (1 of 3) PTHR32108:SF0 - DNA-DIRECTED RNA POLYMERASE SUBUNIT ALPHA M. truncatula Mt4.0v1 1498   chr4: 18339234-18340731
AL2G21700 (1 of 2) K03040 - DNA-directed RNA polymerase subunit alpha (rpoA) A. lyrata v2.1 1031   scaffold_2: 9179179-9180209
AL2G20580 (1 of 2) K03040 - DNA-directed RNA polymerase subunit alpha (rpoA) A. lyrata v2.1 1039   scaffold_2: 8757207-8758245
DCAR_032517 (1 of 1) K03040 - DNA-directed RNA polymerase subunit alpha (rpoA) D. carota v2.0 1062   DCARv2_PT: 77989-79050
Solyc01g007560.2 (1 of 1) K03040 - DNA-directed RNA polymerase subunit alpha (rpoA) S. lycopersicum ITAG2.4 877   SL2.50ch01: 1875492-1876368
Podel.13G148500 (1 of 6) K03040 - DNA-directed RNA polymerase subunit alpha (rpoA) P. deltoides WV94 v2.1 1020   Chr13: 15322623-15323642
Podel.13G150800 (1 of 6) K03040 - DNA-directed RNA polymerase subunit alpha (rpoA) P. deltoides WV94 v2.1 1020   Chr13: 15344565-15345584
Podel.13G155600 (1 of 6) K03040 - DNA-directed RNA polymerase subunit alpha (rpoA) P. deltoides WV94 v2.1 1149   Chr13: 15449655-15450803
Podel.13G170100 (1 of 6) K03040 - DNA-directed RNA polymerase subunit alpha (rpoA) P. deltoides WV94 v2.1 2730   Chr13: 15699871-15702600
Podel.13G164300 (1 of 6) K03040 - DNA-directed RNA polymerase subunit alpha (rpoA) P. deltoides WV94 v2.1 1020   Chr13: 15601762-15602781
Podel.13G163200 (1 of 6) K03040 - DNA-directed RNA polymerase subunit alpha (rpoA) P. deltoides WV94 v2.1 1020   Chr13: 15594531-15595550
PGSC0003DMG400014075 (1 of 1) K02948//K03040 - small subunit ribosomal protein S11 (RP-S11, MRPS11, rpsK) // DNA-directed RNA polymerase subunit alpha (rpoA) S. tuberosum v4.03 1496   ST4.03ch12: 3289992-3291487
Oeu058362.1 (1 of 1) K03040 - DNA-directed RNA polymerase subunit alpha (rpoA) O. europaea v1.0 1014   chr19: 5225467-5226480
Lsat_1_v5_gn_2_92080 (1 of 2) PF00411//PF01000//PF01176//PF01193 - Ribosomal protein S11 (Ribosomal_S11) // RNA polymerase Rpb3/RpoA insert domain (RNA_pol_A_bac) // Translation initiation factor 1A / IF-1 (eIF-1a) // RNA polymerase Rpb3/Rpb11 dimerisation domain (RNA_pol_L) L. sativa V8 2029   Lsat_1_v8_lg_2: 169438895-169440923
Lsat_1_v5_gn_5_50401 (1 of 1) PF01000//PF01193//PF03118 - RNA polymerase Rpb3/RpoA insert domain (RNA_pol_A_bac) // RNA polymerase Rpb3/Rpb11 dimerisation domain (RNA_pol_L) // Bacterial RNA polymerase, alpha chain C terminal domain (RNA_pol_A_CTD) L. sativa V8 959   Lsat_1_v8_lg_5: 113485746-113486704
Lsat_1_v5_gn_0_41600 (1 of 2) PF00411//PF01000//PF01176//PF01193//PF03118 - Ribosomal protein S11 (Ribosomal_S11) // RNA polymerase Rpb3/RpoA insert domain (RNA_pol_A_bac) // Translation initiation factor 1A / IF-1 (eIF-1a) // RNA polymerase Rpb3/Rpb11 dimerisation domain (RNA_pol_L) // Bacterial RNA polymerase, alpha chain C terminal domain (RNA_pol_A_CTD) L. sativa V8 2182   Lsat_1_v8_lg_6: 88149241-88151422
HanXRQChr00c0593g0576341 (1 of 8) K03040 - DNA-directed RNA polymerase subunit alpha (rpoA) H. annuus r1.2 957   HanXRQChr00c0593: 1821-2777
HanXRQChr01g0020241 (1 of 8) K03040 - DNA-directed RNA polymerase subunit alpha (rpoA) H. annuus r1.2 1049   HanXRQChr01: 117283086-117284134
HanXRQChr10g0318081 (1 of 8) K03040 - DNA-directed RNA polymerase subunit alpha (rpoA) H. annuus r1.2 1008   HanXRQChr10: 240937703-240938710
HanXRQChr04g0127511 (1 of 8) K03040 - DNA-directed RNA polymerase subunit alpha (rpoA) H. annuus r1.2 1049   HanXRQChr04: 176810196-176811244
HanXRQCPg0580161 (1 of 8) K03040 - DNA-directed RNA polymerase subunit alpha (rpoA) H. annuus r1.2 1008   HanXRQCP: 77261-78268
HanXRQChr12g0369841 (1 of 2) PF00411//PF01000//PF01193 - Ribosomal protein S11 (Ribosomal_S11) // RNA polymerase Rpb3/RpoA insert domain (RNA_pol_A_bac) // RNA polymerase Rpb3/Rpb11 dimerisation domain (RNA_pol_L) H. annuus r1.2 1281   HanXRQChr12: 62882467-62883747

28 Members

Protein Name Organism Name Cluster ID Cluster Name Same Organism Count Method ID Method Name
Araha.11756s0184.1.p A. halleri v1.1 123750855 RNA polymerase subunit alpha 1 5271 Pentapetalae
Medtr1g070860.1 M. truncatula Mt4.0v1 123750855 RNA polymerase subunit alpha 2 5271 Pentapetalae
Medtr4g051380.1 M. truncatula Mt4.0v1 123750855 RNA polymerase subunit alpha 2 5271 Pentapetalae
Podel.13G148500.1.p P. deltoides WV94 v2.1 123750855 RNA polymerase subunit alpha 6 5271 Pentapetalae
Podel.13G155600.1.p P. deltoides WV94 v2.1 123750855 RNA polymerase subunit alpha 6 5271 Pentapetalae
Podel.13G150800.1.p P. deltoides WV94 v2.1 123750855 RNA polymerase subunit alpha 6 5271 Pentapetalae
PGSC0003DMP400024773 S. tuberosum v4.03 123750855 RNA polymerase subunit alpha 1 5271 Pentapetalae
Oeu058362.1 O. europaea v1.0 123750855 RNA polymerase subunit alpha 1 5271 Pentapetalae
Lsat_1_v5_gn_2_92080.1 L. sativa V8 123750855 RNA polymerase subunit alpha 3 5271 Pentapetalae
HanXRQChr10g0318081 H. annuus r1.2 123750855 RNA polymerase subunit alpha 6 5271 Pentapetalae
HanXRQChr04g0127511 H. annuus r1.2 123750855 RNA polymerase subunit alpha 6 5271 Pentapetalae
HanXRQChr12g0369841 H. annuus r1.2 123750855 RNA polymerase subunit alpha 6 5271 Pentapetalae
HanXRQChr00c0593g0576341 H. annuus r1.2 123750855 RNA polymerase subunit alpha 6 5271 Pentapetalae
HanXRQChr01g0020241 H. annuus r1.2 123750855 RNA polymerase subunit alpha 6 5271 Pentapetalae
ATCG00740.1 A. thaliana TAIR10 123750855 RNA polymerase subunit alpha 1 5271 Pentapetalae
Gorai.013G106800.1 G. raimondii v2.1 123750855 RNA polymerase subunit alpha 1 5271 Pentapetalae
Thecc1EG046399t1 T. cacao v1.1 123750855 RNA polymerase subunit alpha 1 5271 Pentapetalae
Migut.D01434.1.p M. guttatus v2.0 123750855 RNA polymerase subunit alpha 1 5271 Pentapetalae
AL2G21700.t1 A. lyrata v2.1 123750855 RNA polymerase subunit alpha 2 5271 Pentapetalae
AL2G20580.t1 A. lyrata v2.1 123750855 RNA polymerase subunit alpha 2 5271 Pentapetalae
DCAR_032517 D. carota v2.0 123750855 RNA polymerase subunit alpha 1 5271 Pentapetalae
Solyc01g007560.2.1 S. lycopersicum ITAG2.4 123750855 RNA polymerase subunit alpha 1 5271 Pentapetalae
Podel.13G170100.1.p P. deltoides WV94 v2.1 123750855 RNA polymerase subunit alpha 6 5271 Pentapetalae
Podel.13G164300.1.p P. deltoides WV94 v2.1 123750855 RNA polymerase subunit alpha 6 5271 Pentapetalae
Podel.13G163200.1.p P. deltoides WV94 v2.1 123750855 RNA polymerase subunit alpha 6 5271 Pentapetalae
Lsat_1_v5_gn_5_50401.1 L. sativa V8 123750855 RNA polymerase subunit alpha 3 5271 Pentapetalae
Lsat_1_v5_gn_0_41600.1 L. sativa V8 123750855 RNA polymerase subunit alpha 3 5271 Pentapetalae
HanXRQCPg0580161 H. annuus r1.2 123750855 RNA polymerase subunit alpha 6 5271 Pentapetalae