Gene : ATCG00740 A. thaliana TAIR10
Defline:  (1 of 1) K03040 - DNA-directed RNA polymerase subunit alpha (rpoA) Genomic Order:  53
Name:  ? ATCG00740 Secondary Identifier:  ? PAC:19637960
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
ATCG00740 0.5kb upstream 0.5kb upstream 1490 true ChrC: 77901-79390 Arabidopsis thaliana
ATCG00740 0.5kb upstream 0.5kb upstream 500 false ChrC: 78891-79390 Arabidopsis thaliana
ATCG00740 0.5kb downstream 0.5kb downstream 1490 true ChrC: 77401-78890 Arabidopsis thaliana
ATCG00740 0.5kb downstream 0.5kb downstream 500 false ChrC: 77401-77900 Arabidopsis thaliana
ATCG00740 1.0kb upstream 1.0kb upstream 1990 true ChrC: 77901-79890 Arabidopsis thaliana
ATCG00740 1.0kb upstream 1.0kb upstream 1000 false ChrC: 78891-79890 Arabidopsis thaliana
ATCG00740 1.0kb downstream 1.0kb downstream 1990 true ChrC: 76901-78890 Arabidopsis thaliana
ATCG00740 1.0kb downstream 1.0kb downstream 1000 false ChrC: 76901-77900 Arabidopsis thaliana
ATCG00740 2.0kb upstream 2.0kb upstream 2990 true ChrC: 77901-80890 Arabidopsis thaliana
ATCG00740 2.0kb upstream 2.0kb upstream 2000 false ChrC: 78891-80890 Arabidopsis thaliana
ATCG00740 2.0kb downstream 2.0kb downstream 2990 true ChrC: 75901-78890 Arabidopsis thaliana
ATCG00740 2.0kb downstream 2.0kb downstream 2000 false ChrC: 75901-77900 Arabidopsis thaliana
ATCG00740 5.0kb upstream 5.0kb upstream 5990 true ChrC: 77901-83890 Arabidopsis thaliana
ATCG00740 5.0kb upstream 5.0kb upstream 5000 false ChrC: 78891-83890 Arabidopsis thaliana
ATCG00740 5.0kb downstream 5.0kb downstream 5990 true ChrC: 72901-78890 Arabidopsis thaliana
ATCG00740 5.0kb downstream 5.0kb downstream 5000 false ChrC: 72901-77900 Arabidopsis thaliana
ATCG00740 10.0kb upstream 10.0kb upstream 10990 true ChrC: 77901-88890 Arabidopsis thaliana
ATCG00740 10.0kb upstream 10.0kb upstream 10000 false ChrC: 78891-88890 Arabidopsis thaliana
ATCG00740 10.0kb downstream 10.0kb downstream 10990 true ChrC: 67901-78890 Arabidopsis thaliana
ATCG00740 10.0kb downstream 10.0kb downstream 10000 false ChrC: 67901-77900 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029214 5273 Angiosperm View MSA
122332072 5261 Brassicaceae View MSA
123829507 5264 Brassicales-Malvales View MSA
124321604 5266 SBM View MSA
124245148 5268 Malvidae View MSA
124037285 5270 Rosid View MSA
123750855 5271 Pentapetalae View MSA
122773847 5272 Eudicot View MSA
121350838 5274 Embryophyte View MSA
123426853 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.862        
cufflinks 2.118        
cufflinks 9.013       High
cufflinks 1.802       Low
cufflinks 2.273        
cufflinks 4.367        

0 Strain