Gene : Solyc01g007560.2 S. lycopersicum ITAG2.4
Defline:  (1 of 1) K03040 - DNA-directed RNA polymerase subunit alpha (rpoA) Description:  DNA-directed RNA polymerase subunit alpha (AHRD V1 ***- D3WBC7_9BORA); contains Interpro domain(s) IPR011773 DNA-directed RNA polymerase, alpha subunit
Genomic Order:  257 Name:  ? Solyc01g007560.2
Secondary Identifier:  ? PAC:36138935
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc01g007560.2 0.5kb upstream 0.5kb upstream 1377 true SL2.50ch01: 1875492-1876868 Solanum lycopersicum
Solyc01g007560.2 0.5kb upstream 0.5kb upstream 500 false SL2.50ch01: 1876369-1876868 Solanum lycopersicum
Solyc01g007560.2 0.5kb downstream 0.5kb downstream 1377 true SL2.50ch01: 1874992-1876368 Solanum lycopersicum
Solyc01g007560.2 0.5kb downstream 0.5kb downstream 500 false SL2.50ch01: 1874992-1875491 Solanum lycopersicum
Solyc01g007560.2 1.0kb upstream 1.0kb upstream 1877 true SL2.50ch01: 1875492-1877368 Solanum lycopersicum
Solyc01g007560.2 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch01: 1876369-1877368 Solanum lycopersicum
Solyc01g007560.2 1.0kb downstream 1.0kb downstream 1877 true SL2.50ch01: 1874492-1876368 Solanum lycopersicum
Solyc01g007560.2 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch01: 1874492-1875491 Solanum lycopersicum
Solyc01g007560.2 2.0kb upstream 2.0kb upstream 2877 true SL2.50ch01: 1875492-1878368 Solanum lycopersicum
Solyc01g007560.2 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch01: 1876369-1878368 Solanum lycopersicum
Solyc01g007560.2 2.0kb downstream 2.0kb downstream 2877 true SL2.50ch01: 1873492-1876368 Solanum lycopersicum
Solyc01g007560.2 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch01: 1873492-1875491 Solanum lycopersicum
Solyc01g007560.2 5.0kb upstream 5.0kb upstream 5877 true SL2.50ch01: 1875492-1881368 Solanum lycopersicum
Solyc01g007560.2 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch01: 1876369-1881368 Solanum lycopersicum
Solyc01g007560.2 5.0kb downstream 5.0kb downstream 5877 true SL2.50ch01: 1870492-1876368 Solanum lycopersicum
Solyc01g007560.2 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch01: 1870492-1875491 Solanum lycopersicum
Solyc01g007560.2 10.0kb upstream 10.0kb upstream 10877 true SL2.50ch01: 1875492-1886368 Solanum lycopersicum
Solyc01g007560.2 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch01: 1876369-1886368 Solanum lycopersicum
Solyc01g007560.2 10.0kb downstream 10.0kb downstream 10877 true SL2.50ch01: 1865492-1876368 Solanum lycopersicum
Solyc01g007560.2 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch01: 1865492-1875491 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029214 5273 Angiosperm View MSA
121480304 5263 Asterids View MSA
123750855 5271 Pentapetalae View MSA
122773847 5272 Eudicot View MSA
121350838 5274 Embryophyte View MSA
123426853 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain