Gene : Lsat_1_v5_gn_0_41600 L. sativa V8
Defline:  (1 of 2) PF00411//PF01000//PF01176//PF01193//PF03118 - Ribosomal protein S11 (Ribosomal_S11) // RNA polymerase Rpb3/RpoA insert domain (RNA_pol_A_bac) // Translation initiation factor 1A / IF-1 (eIF-1a) // RNA polymerase Rpb3/Rpb11 dimerisation domain (RNA_pol_L) // Bacterial RNA polymerase, alpha chain C terminal domain (RNA_pol_A_CTD) Genomic Order:  1816
Name:  ? Lsat_1_v5_gn_0_41600 Secondary Identifier:  ? PAC:38939988
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_0_41600 0.5kb upstream 0.5kb upstream 2682   true Lsat_1_v8_lg_6: 88149241-88151922 Lactuca sativa
Lsat_1_v5_gn_0_41600 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_6: 88151423-88151922 Lactuca sativa
Lsat_1_v5_gn_0_41600 0.5kb downstream 0.5kb downstream 2682   true Lsat_1_v8_lg_6: 88148741-88151422 Lactuca sativa
Lsat_1_v5_gn_0_41600 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_6: 88148741-88149240 Lactuca sativa
Lsat_1_v5_gn_0_41600 1.0kb upstream 1.0kb upstream 3182   true Lsat_1_v8_lg_6: 88149241-88152422 Lactuca sativa
Lsat_1_v5_gn_0_41600 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_6: 88151423-88152422 Lactuca sativa
Lsat_1_v5_gn_0_41600 1.0kb downstream 1.0kb downstream 3182   true Lsat_1_v8_lg_6: 88148241-88151422 Lactuca sativa
Lsat_1_v5_gn_0_41600 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_6: 88148241-88149240 Lactuca sativa
Lsat_1_v5_gn_0_41600 2.0kb upstream 2.0kb upstream 4182   true Lsat_1_v8_lg_6: 88149241-88153422 Lactuca sativa
Lsat_1_v5_gn_0_41600 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_6: 88151423-88153422 Lactuca sativa
Lsat_1_v5_gn_0_41600 2.0kb downstream 2.0kb downstream 4182   true Lsat_1_v8_lg_6: 88147241-88151422 Lactuca sativa
Lsat_1_v5_gn_0_41600 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_6: 88147241-88149240 Lactuca sativa
Lsat_1_v5_gn_0_41600 5.0kb upstream 5.0kb upstream 7182   true Lsat_1_v8_lg_6: 88149241-88156422 Lactuca sativa
Lsat_1_v5_gn_0_41600 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_6: 88151423-88156422 Lactuca sativa
Lsat_1_v5_gn_0_41600 5.0kb downstream 5.0kb downstream 7182   true Lsat_1_v8_lg_6: 88144241-88151422 Lactuca sativa
Lsat_1_v5_gn_0_41600 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_6: 88144241-88149240 Lactuca sativa
Lsat_1_v5_gn_0_41600 10.0kb upstream 10.0kb upstream 12182   true Lsat_1_v8_lg_6: 88149241-88161422 Lactuca sativa
Lsat_1_v5_gn_0_41600 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_6: 88151423-88161422 Lactuca sativa
Lsat_1_v5_gn_0_41600 10.0kb downstream 10.0kb downstream 12182   true Lsat_1_v8_lg_6: 88139241-88151422 Lactuca sativa
Lsat_1_v5_gn_0_41600 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_6: 88139241-88149240 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029214 5273 Angiosperm View MSA
121446686 5263 Asterids Singleton cluster - no MSA
123750855 5271 Pentapetalae View MSA
122773847 5272 Eudicot View MSA
121350838 5274 Embryophyte View MSA
123426853 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain