Gene : Thecc1EG046399 T. cacao v1.1
Defline:  (1 of 1) K03040 - DNA-directed RNA polymerase subunit alpha (rpoA) Genomic Order:  28
Name:  ? Thecc1EG046399 Secondary Identifier:  ? PAC:27459558
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG046399 0.5kb upstream 0.5kb upstream 4165 true cacao1chloroplast: 81005-85169 Theobroma cacao
Thecc1EG046399 0.5kb upstream 0.5kb upstream 500 false cacao1chloroplast: 84670-85169 Theobroma cacao
Thecc1EG046399 0.5kb downstream 0.5kb downstream 4165 true cacao1chloroplast: 80505-84669 Theobroma cacao
Thecc1EG046399 0.5kb downstream 0.5kb downstream 500 false cacao1chloroplast: 80505-81004 Theobroma cacao
Thecc1EG046399 1.0kb upstream 1.0kb upstream 4665 true cacao1chloroplast: 81005-85669 Theobroma cacao
Thecc1EG046399 1.0kb upstream 1.0kb upstream 1000 false cacao1chloroplast: 84670-85669 Theobroma cacao
Thecc1EG046399 1.0kb downstream 1.0kb downstream 4665 true cacao1chloroplast: 80005-84669 Theobroma cacao
Thecc1EG046399 1.0kb downstream 1.0kb downstream 1000 false cacao1chloroplast: 80005-81004 Theobroma cacao
Thecc1EG046399 2.0kb upstream 2.0kb upstream 5665 true cacao1chloroplast: 81005-86669 Theobroma cacao
Thecc1EG046399 2.0kb upstream 2.0kb upstream 2000 false cacao1chloroplast: 84670-86669 Theobroma cacao
Thecc1EG046399 2.0kb downstream 2.0kb downstream 5665 true cacao1chloroplast: 79005-84669 Theobroma cacao
Thecc1EG046399 2.0kb downstream 2.0kb downstream 2000 false cacao1chloroplast: 79005-81004 Theobroma cacao
Thecc1EG046399 5.0kb upstream 5.0kb upstream 8665 true cacao1chloroplast: 81005-89669 Theobroma cacao
Thecc1EG046399 5.0kb upstream 5.0kb upstream 5000 false cacao1chloroplast: 84670-89669 Theobroma cacao
Thecc1EG046399 5.0kb downstream 5.0kb downstream 8665 true cacao1chloroplast: 76005-84669 Theobroma cacao
Thecc1EG046399 5.0kb downstream 5.0kb downstream 5000 false cacao1chloroplast: 76005-81004 Theobroma cacao
Thecc1EG046399 10.0kb upstream 10.0kb upstream 13665 true cacao1chloroplast: 81005-94669 Theobroma cacao
Thecc1EG046399 10.0kb upstream 10.0kb upstream 10000 false cacao1chloroplast: 84670-94669 Theobroma cacao
Thecc1EG046399 10.0kb downstream 10.0kb downstream 13665 true cacao1chloroplast: 71005-84669 Theobroma cacao
Thecc1EG046399 10.0kb downstream 10.0kb downstream 10000 false cacao1chloroplast: 71005-81004 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029214 5273 Angiosperm View MSA
123829507 5264 Brassicales-Malvales View MSA
124321604 5266 SBM View MSA
124245148 5268 Malvidae View MSA
124037285 5270 Rosid View MSA
123750855 5271 Pentapetalae View MSA
122773847 5272 Eudicot View MSA
121350838 5274 Embryophyte View MSA
123426853 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain