Gene : Medtr4g051380 M. truncatula Mt4.0v1
Defline:  (1 of 3) PTHR32108:SF0 - DNA-DIRECTED RNA POLYMERASE SUBUNIT ALPHA Description:  DNA-directed RNA polymerase subunit alpha
Genomic Order:  2154 Name:  ? Medtr4g051380
Secondary Identifier:  ? PAC:31107871
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g051380 0.5kb upstream 0.5kb upstream 1998 true chr4: 18339234-18341231 Medicago truncatula
Medtr4g051380 0.5kb upstream 0.5kb upstream 500 false chr4: 18340732-18341231 Medicago truncatula
Medtr4g051380 0.5kb downstream 0.5kb downstream 1998 true chr4: 18338734-18340731 Medicago truncatula
Medtr4g051380 0.5kb downstream 0.5kb downstream 500 false chr4: 18338734-18339233 Medicago truncatula
Medtr4g051380 1.0kb upstream 1.0kb upstream 2498 true chr4: 18339234-18341731 Medicago truncatula
Medtr4g051380 1.0kb upstream 1.0kb upstream 1000 false chr4: 18340732-18341731 Medicago truncatula
Medtr4g051380 1.0kb downstream 1.0kb downstream 2498 true chr4: 18338234-18340731 Medicago truncatula
Medtr4g051380 1.0kb downstream 1.0kb downstream 1000 false chr4: 18338234-18339233 Medicago truncatula
Medtr4g051380 2.0kb upstream 2.0kb upstream 3498 true chr4: 18339234-18342731 Medicago truncatula
Medtr4g051380 2.0kb upstream 2.0kb upstream 2000 false chr4: 18340732-18342731 Medicago truncatula
Medtr4g051380 2.0kb downstream 2.0kb downstream 3498 true chr4: 18337234-18340731 Medicago truncatula
Medtr4g051380 2.0kb downstream 2.0kb downstream 2000 false chr4: 18337234-18339233 Medicago truncatula
Medtr4g051380 5.0kb upstream 5.0kb upstream 6498 true chr4: 18339234-18345731 Medicago truncatula
Medtr4g051380 5.0kb upstream 5.0kb upstream 5000 false chr4: 18340732-18345731 Medicago truncatula
Medtr4g051380 5.0kb downstream 5.0kb downstream 6498 true chr4: 18334234-18340731 Medicago truncatula
Medtr4g051380 5.0kb downstream 5.0kb downstream 5000 false chr4: 18334234-18339233 Medicago truncatula
Medtr4g051380 10.0kb upstream 10.0kb upstream 11498 true chr4: 18339234-18350731 Medicago truncatula
Medtr4g051380 10.0kb upstream 10.0kb upstream 10000 false chr4: 18340732-18350731 Medicago truncatula
Medtr4g051380 10.0kb downstream 10.0kb downstream 11498 true chr4: 18329234-18340731 Medicago truncatula
Medtr4g051380 10.0kb downstream 10.0kb downstream 10000 false chr4: 18329234-18339233 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029214 5273 Angiosperm View MSA
122261491 5265 Fabidae Singleton cluster - no MSA
124037285 5270 Rosid View MSA
123750855 5271 Pentapetalae View MSA
122773847 5272 Eudicot View MSA
121350838 5274 Embryophyte View MSA
123426853 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.381        
cufflinks 3.351        
cufflinks 4.278       High
cufflinks 0.096       Low
cufflinks 3.148        
cufflinks 0.481        
cufflinks 0.285        
cufflinks 3.938       High
cufflinks 0.178       Low

0 Strain