Gene : Seita.J014600 S. italica v2.2
Defline:  (1 of 1) PTHR33370:SF1 - TRANSLATION INITIATION FACTOR IF-1, CHLOROPLASTIC Genomic Order:  20
Name:  ? Seita.J014600 Secondary Identifier:  ? PAC:32706124
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.J014600 0.5kb upstream 0.5kb upstream 806 true scaffold_14: 19272-20077 Setaria italica
Seita.J014600 0.5kb upstream 0.5kb upstream 500 false scaffold_14: 19578-20077 Setaria italica
Seita.J014600 0.5kb downstream 0.5kb downstream 806 true scaffold_14: 18772-19577 Setaria italica
Seita.J014600 0.5kb downstream 0.5kb downstream 500 false scaffold_14: 18772-19271 Setaria italica
Seita.J014600 1.0kb upstream 1.0kb upstream 1306 true scaffold_14: 19272-20577 Setaria italica
Seita.J014600 1.0kb upstream 1.0kb upstream 1000 false scaffold_14: 19578-20577 Setaria italica
Seita.J014600 1.0kb downstream 1.0kb downstream 1306 true scaffold_14: 18272-19577 Setaria italica
Seita.J014600 1.0kb downstream 1.0kb downstream 1000 false scaffold_14: 18272-19271 Setaria italica
Seita.J014600 2.0kb upstream 2.0kb upstream 2306 true scaffold_14: 19272-21577 Setaria italica
Seita.J014600 2.0kb upstream 2.0kb upstream 2000 false scaffold_14: 19578-21577 Setaria italica
Seita.J014600 2.0kb downstream 2.0kb downstream 2306 true scaffold_14: 17272-19577 Setaria italica
Seita.J014600 2.0kb downstream 2.0kb downstream 2000 false scaffold_14: 17272-19271 Setaria italica
Seita.J014600 5.0kb upstream 5.0kb upstream 5306 true scaffold_14: 19272-24577 Setaria italica
Seita.J014600 5.0kb upstream 5.0kb upstream 5000 false scaffold_14: 19578-24577 Setaria italica
Seita.J014600 5.0kb downstream 5.0kb downstream 5306 true scaffold_14: 14272-19577 Setaria italica
Seita.J014600 5.0kb downstream 5.0kb downstream 5000 false scaffold_14: 14272-19271 Setaria italica
Seita.J014600 10.0kb upstream 10.0kb upstream 10306 true scaffold_14: 19272-29577 Setaria italica
Seita.J014600 10.0kb upstream 10.0kb upstream 10000 false scaffold_14: 19578-29577 Setaria italica
Seita.J014600 10.0kb downstream 10.0kb downstream 10306 true scaffold_14: 9272-19577 Setaria italica
Seita.J014600 10.0kb downstream 10.0kb downstream 10000 false scaffold_14: 9272-19271 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122028984 5273 Angiosperm View MSA
122180630 5267 Panicoideae View MSA
124589409 5269 Grass View MSA
121351623 5274 Embryophyte View MSA
123428074 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.509        
cufflinks 0.967        
cufflinks 5.609        
cufflinks 3.457        
cufflinks 4.916        
cufflinks 0.88        
cufflinks 4.323        
cufflinks 6.826        
cufflinks 5.083        
cufflinks 97.171     High High
cufflinks 8.828        
cufflinks 0.323       Low
cufflinks 3.621        
cufflinks 4.156        
cufflinks 1.045        
cufflinks 5.098        
cufflinks 0.493       Low
cufflinks 7.291        
cufflinks 3.825        
cufflinks 0.329       Low

0 Strain