Gene : Seita.J013600 S. italica v2.2
Defline:  (1 of 1) PTHR15238:SF3 - 50S RIBOSOMAL PROTEIN L33, CHLOROPLASTIC Genomic Order:  10
Name:  ? Seita.J013600 Secondary Identifier:  ? PAC:32706126
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.J013600 0.5kb upstream 0.5kb upstream 701 true scaffold_14: 7770-8470 Setaria italica
Seita.J013600 0.5kb upstream 0.5kb upstream 500 false scaffold_14: 7770-8269 Setaria italica
Seita.J013600 0.5kb downstream 0.5kb downstream 701 true scaffold_14: 8270-8970 Setaria italica
Seita.J013600 0.5kb downstream 0.5kb downstream 500 false scaffold_14: 8471-8970 Setaria italica
Seita.J013600 1.0kb upstream 1.0kb upstream 1201 true scaffold_14: 7270-8470 Setaria italica
Seita.J013600 1.0kb upstream 1.0kb upstream 1000 false scaffold_14: 7270-8269 Setaria italica
Seita.J013600 1.0kb downstream 1.0kb downstream 1201 true scaffold_14: 8270-9470 Setaria italica
Seita.J013600 1.0kb downstream 1.0kb downstream 1000 false scaffold_14: 8471-9470 Setaria italica
Seita.J013600 2.0kb upstream 2.0kb upstream 2201 true scaffold_14: 6270-8470 Setaria italica
Seita.J013600 2.0kb upstream 2.0kb upstream 2000 false scaffold_14: 6270-8269 Setaria italica
Seita.J013600 2.0kb downstream 2.0kb downstream 2201 true scaffold_14: 8270-10470 Setaria italica
Seita.J013600 2.0kb downstream 2.0kb downstream 2000 false scaffold_14: 8471-10470 Setaria italica
Seita.J013600 5.0kb upstream 5.0kb upstream 5201 true scaffold_14: 3270-8470 Setaria italica
Seita.J013600 5.0kb upstream 5.0kb upstream 5000 false scaffold_14: 3270-8269 Setaria italica
Seita.J013600 5.0kb downstream 5.0kb downstream 5201 true scaffold_14: 8270-13470 Setaria italica
Seita.J013600 5.0kb downstream 5.0kb downstream 5000 false scaffold_14: 8471-13470 Setaria italica
Seita.J013600 10.0kb upstream 10.0kb upstream 8470 true scaffold_14: 1-8470 Setaria italica
Seita.J013600 10.0kb upstream 10.0kb upstream 8269 false scaffold_14: 1-8269 Setaria italica
Seita.J013600 10.0kb downstream 10.0kb downstream 10201 true scaffold_14: 8270-18470 Setaria italica
Seita.J013600 10.0kb downstream 10.0kb downstream 10000 false scaffold_14: 8471-18470 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029878 5273 Angiosperm View MSA
122180628 5267 Panicoideae View MSA
124586265 5269 Grass View MSA
121299138 5274 Embryophyte View MSA
123428185 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.762        
cufflinks 0.322       Low
cufflinks 2.804        
cufflinks 2.111        
cufflinks 3.54        
cufflinks 0.094     Low Low
cufflinks 2.437        
cufflinks 0.765        
cufflinks 1.923        
cufflinks 160.038     High High
cufflinks 7.61        
cufflinks 0.165       Low
cufflinks 1.646        
cufflinks 2.731        
cufflinks 0.689        
cufflinks 3.628        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 17.696     High High
cufflinks 2.796        
cufflinks 0.0     Not Expressed Not Expressed

0 Strain