Gene : Seita.J020100 S. italica v2.2
Defline:  (1 of 4) KOG3301 - Ribosomal protein S4 Genomic Order:  75
Name:  ? Seita.J020100 Secondary Identifier:  ? PAC:32706129
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.J020100 0.5kb upstream 0.5kb upstream 1079 true scaffold_14: 127557-128635 Setaria italica
Seita.J020100 0.5kb upstream 0.5kb upstream 500 false scaffold_14: 128136-128635 Setaria italica
Seita.J020100 0.5kb downstream 0.5kb downstream 1079 true scaffold_14: 127057-128135 Setaria italica
Seita.J020100 0.5kb downstream 0.5kb downstream 500 false scaffold_14: 127057-127556 Setaria italica
Seita.J020100 1.0kb upstream 1.0kb upstream 1579 true scaffold_14: 127557-129135 Setaria italica
Seita.J020100 1.0kb upstream 1.0kb upstream 1000 false scaffold_14: 128136-129135 Setaria italica
Seita.J020100 1.0kb downstream 1.0kb downstream 1579 true scaffold_14: 126557-128135 Setaria italica
Seita.J020100 1.0kb downstream 1.0kb downstream 1000 false scaffold_14: 126557-127556 Setaria italica
Seita.J020100 2.0kb upstream 2.0kb upstream 2579 true scaffold_14: 127557-130135 Setaria italica
Seita.J020100 2.0kb upstream 2.0kb upstream 2000 false scaffold_14: 128136-130135 Setaria italica
Seita.J020100 2.0kb downstream 2.0kb downstream 2579 true scaffold_14: 125557-128135 Setaria italica
Seita.J020100 2.0kb downstream 2.0kb downstream 2000 false scaffold_14: 125557-127556 Setaria italica
Seita.J020100 5.0kb upstream 5.0kb upstream 5579 true scaffold_14: 127557-133135 Setaria italica
Seita.J020100 5.0kb upstream 5.0kb upstream 5000 false scaffold_14: 128136-133135 Setaria italica
Seita.J020100 5.0kb downstream 5.0kb downstream 5579 true scaffold_14: 122557-128135 Setaria italica
Seita.J020100 5.0kb downstream 5.0kb downstream 5000 false scaffold_14: 122557-127556 Setaria italica
Seita.J020100 10.0kb upstream 10.0kb upstream 10579 true scaffold_14: 127557-138135 Setaria italica
Seita.J020100 10.0kb upstream 10.0kb upstream 10000 false scaffold_14: 128136-138135 Setaria italica
Seita.J020100 10.0kb downstream 10.0kb downstream 10579 true scaffold_14: 117557-128135 Setaria italica
Seita.J020100 10.0kb downstream 10.0kb downstream 10000 false scaffold_14: 117557-127556 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122028910 5273 Angiosperm View MSA
122117424 5267 Panicoideae View MSA
124590816 5269 Grass View MSA
121298338 5274 Embryophyte View MSA
123336315 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.67        
cufflinks 0.425        
cufflinks 2.585        
cufflinks 1.896        
cufflinks 2.535        
cufflinks 0.321        
cufflinks 2.2        
cufflinks 5.859        
cufflinks 3.986        
cufflinks 64.3     High High
cufflinks 2.808        
cufflinks 0.03     Low Low
cufflinks 2.376        
cufflinks 1.586        
cufflinks 0.54        
cufflinks 2.214        
cufflinks 0.142       Low
cufflinks 1.057        
cufflinks 2.201        
cufflinks 0.234       Low

0 Strain