Gene : Seita.J018100 S. italica v2.2
Defline:  (1 of 2) PTHR12919:SF22 - 30S RIBOSOMAL PROTEIN S16, CHLOROPLASTIC Genomic Order:  55
Name:  ? Seita.J018100 Secondary Identifier:  ? PAC:32706090
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.J018100 0.5kb upstream 0.5kb upstream 1603 true scaffold_14: 85341-86943 Setaria italica
Seita.J018100 0.5kb upstream 0.5kb upstream 500 false scaffold_14: 86444-86943 Setaria italica
Seita.J018100 0.5kb downstream 0.5kb downstream 1603 true scaffold_14: 84841-86443 Setaria italica
Seita.J018100 0.5kb downstream 0.5kb downstream 500 false scaffold_14: 84841-85340 Setaria italica
Seita.J018100 1.0kb upstream 1.0kb upstream 2103 true scaffold_14: 85341-87443 Setaria italica
Seita.J018100 1.0kb upstream 1.0kb upstream 1000 false scaffold_14: 86444-87443 Setaria italica
Seita.J018100 1.0kb downstream 1.0kb downstream 2103 true scaffold_14: 84341-86443 Setaria italica
Seita.J018100 1.0kb downstream 1.0kb downstream 1000 false scaffold_14: 84341-85340 Setaria italica
Seita.J018100 2.0kb upstream 2.0kb upstream 3103 true scaffold_14: 85341-88443 Setaria italica
Seita.J018100 2.0kb upstream 2.0kb upstream 2000 false scaffold_14: 86444-88443 Setaria italica
Seita.J018100 2.0kb downstream 2.0kb downstream 3103 true scaffold_14: 83341-86443 Setaria italica
Seita.J018100 2.0kb downstream 2.0kb downstream 2000 false scaffold_14: 83341-85340 Setaria italica
Seita.J018100 5.0kb upstream 5.0kb upstream 6103 true scaffold_14: 85341-91443 Setaria italica
Seita.J018100 5.0kb upstream 5.0kb upstream 5000 false scaffold_14: 86444-91443 Setaria italica
Seita.J018100 5.0kb downstream 5.0kb downstream 6103 true scaffold_14: 80341-86443 Setaria italica
Seita.J018100 5.0kb downstream 5.0kb downstream 5000 false scaffold_14: 80341-85340 Setaria italica
Seita.J018100 10.0kb upstream 10.0kb upstream 11103 true scaffold_14: 85341-96443 Setaria italica
Seita.J018100 10.0kb upstream 10.0kb upstream 10000 false scaffold_14: 86444-96443 Setaria italica
Seita.J018100 10.0kb downstream 10.0kb downstream 11103 true scaffold_14: 75341-86443 Setaria italica
Seita.J018100 10.0kb downstream 10.0kb downstream 10000 false scaffold_14: 75341-85340 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029145 5273 Angiosperm View MSA
122189899 5267 Panicoideae View MSA
124568898 5269 Grass View MSA
121298528 5274 Embryophyte View MSA
123426601 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.503        
cufflinks 0.286       Low
cufflinks 2.099        
cufflinks 1.101        
cufflinks 1.377        
cufflinks 0.116     Low Low
cufflinks 1.288        
cufflinks 0.478        
cufflinks 0.855        
cufflinks 33.562     High High
cufflinks 1.706        
cufflinks 0.882        
cufflinks 5.023       High
cufflinks 2.278        
cufflinks 0.402        
cufflinks 1.698        
cufflinks 0.43        
cufflinks 2.255        
cufflinks 2.305        
cufflinks 0.355        

0 Strain