Gene : Seita.J019000 S. italica v2.2
Defline:  (1 of 13) PTHR19376 - DNA-DIRECTED RNA POLYMERASE Genomic Order:  64
Name:  ? Seita.J019000 Secondary Identifier:  ? PAC:32706116
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.J019000 0.5kb upstream 0.5kb upstream 1967 true scaffold_14: 104623-106589 Setaria italica
Seita.J019000 0.5kb upstream 0.5kb upstream 500 false scaffold_14: 104623-105122 Setaria italica
Seita.J019000 0.5kb downstream 0.5kb downstream 1967 true scaffold_14: 105123-107089 Setaria italica
Seita.J019000 0.5kb downstream 0.5kb downstream 500 false scaffold_14: 106590-107089 Setaria italica
Seita.J019000 1.0kb upstream 1.0kb upstream 2467 true scaffold_14: 104123-106589 Setaria italica
Seita.J019000 1.0kb upstream 1.0kb upstream 1000 false scaffold_14: 104123-105122 Setaria italica
Seita.J019000 1.0kb downstream 1.0kb downstream 2467 true scaffold_14: 105123-107589 Setaria italica
Seita.J019000 1.0kb downstream 1.0kb downstream 1000 false scaffold_14: 106590-107589 Setaria italica
Seita.J019000 2.0kb upstream 2.0kb upstream 3467 true scaffold_14: 103123-106589 Setaria italica
Seita.J019000 2.0kb upstream 2.0kb upstream 2000 false scaffold_14: 103123-105122 Setaria italica
Seita.J019000 2.0kb downstream 2.0kb downstream 3467 true scaffold_14: 105123-108589 Setaria italica
Seita.J019000 2.0kb downstream 2.0kb downstream 2000 false scaffold_14: 106590-108589 Setaria italica
Seita.J019000 5.0kb upstream 5.0kb upstream 6467 true scaffold_14: 100123-106589 Setaria italica
Seita.J019000 5.0kb upstream 5.0kb upstream 5000 false scaffold_14: 100123-105122 Setaria italica
Seita.J019000 5.0kb downstream 5.0kb downstream 6467 true scaffold_14: 105123-111589 Setaria italica
Seita.J019000 5.0kb downstream 5.0kb downstream 5000 false scaffold_14: 106590-111589 Setaria italica
Seita.J019000 10.0kb upstream 10.0kb upstream 11467 true scaffold_14: 95123-106589 Setaria italica
Seita.J019000 10.0kb upstream 10.0kb upstream 10000 false scaffold_14: 95123-105122 Setaria italica
Seita.J019000 10.0kb downstream 10.0kb downstream 11467 true scaffold_14: 105123-116589 Setaria italica
Seita.J019000 10.0kb downstream 10.0kb downstream 10000 false scaffold_14: 106590-116589 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122052652 5267 Panicoideae Singleton cluster - no MSA
124590929 5269 Grass View MSA
122051262 5273 Angiosperm View MSA
121312381 5274 Embryophyte View MSA
123349558 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.186        
cufflinks 0.066     Low Low
cufflinks 0.56        
cufflinks 0.251        
cufflinks 0.15        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.382        
cufflinks 0.138        
cufflinks 0.147        
cufflinks 17.699     High High
cufflinks 0.775        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.661        
cufflinks 1.108        
cufflinks 0.201        
cufflinks 0.296        
cufflinks 0.039     Low Low
cufflinks 1.272        
cufflinks 0.265        
cufflinks 0.023     Low Low

0 Strain