Gene : Seita.1G327900 S. italica v2.2
Defline:  (1 of 110) PTHR24078 - DNAJ HOMOLOG SUBFAMILY C MEMBER Genomic Order:  3279
Name:  ? Seita.1G327900 Secondary Identifier:  ? PAC:32698126
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G327900 0.5kb upstream 0.5kb upstream 3097 true scaffold_1: 38806666-38809762 Setaria italica
Seita.1G327900 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 38809263-38809762 Setaria italica
Seita.1G327900 0.5kb downstream 0.5kb downstream 3097 true scaffold_1: 38806166-38809262 Setaria italica
Seita.1G327900 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 38806166-38806665 Setaria italica
Seita.1G327900 1.0kb upstream 1.0kb upstream 3597 true scaffold_1: 38806666-38810262 Setaria italica
Seita.1G327900 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 38809263-38810262 Setaria italica
Seita.1G327900 1.0kb downstream 1.0kb downstream 3597 true scaffold_1: 38805666-38809262 Setaria italica
Seita.1G327900 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 38805666-38806665 Setaria italica
Seita.1G327900 2.0kb upstream 2.0kb upstream 4597 true scaffold_1: 38806666-38811262 Setaria italica
Seita.1G327900 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 38809263-38811262 Setaria italica
Seita.1G327900 2.0kb downstream 2.0kb downstream 4597 true scaffold_1: 38804666-38809262 Setaria italica
Seita.1G327900 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 38804666-38806665 Setaria italica
Seita.1G327900 5.0kb upstream 5.0kb upstream 7597 true scaffold_1: 38806666-38814262 Setaria italica
Seita.1G327900 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 38809263-38814262 Setaria italica
Seita.1G327900 5.0kb downstream 5.0kb downstream 7597 true scaffold_1: 38801666-38809262 Setaria italica
Seita.1G327900 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 38801666-38806665 Setaria italica
Seita.1G327900 10.0kb upstream 10.0kb upstream 12597 true scaffold_1: 38806666-38819262 Setaria italica
Seita.1G327900 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 38809263-38819262 Setaria italica
Seita.1G327900 10.0kb downstream 10.0kb downstream 12597 true scaffold_1: 38796666-38809262 Setaria italica
Seita.1G327900 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 38796666-38806665 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122187271 5267 Panicoideae View MSA
124569374 5269 Grass View MSA
122050043 5273 Angiosperm View MSA
123429067 5275 Viridiplantae View MSA
121349167 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.466        
cufflinks 3.611        
cufflinks 3.09        
cufflinks 4.544       High
cufflinks 4.205       High
cufflinks 2.784        
cufflinks 1.829       Low
cufflinks 3.226        
cufflinks 2.377        
cufflinks 4.304       High
cufflinks 2.086        
cufflinks 3.788        
cufflinks 2.507        
cufflinks 3.249        
cufflinks 1.817       Low
cufflinks 2.15        
cufflinks 2.115        
cufflinks 2.779        
cufflinks 4.384       High
cufflinks 1.607       Low

0 Strain