Gene : Seita.1G340600 S. italica v2.2
Genomic Order:  3406 Name:  ? Seita.1G340600
Secondary Identifier:  ? PAC:32698270
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G340600 0.5kb upstream 0.5kb upstream 2817 true scaffold_1: 39717016-39719832 Setaria italica
Seita.1G340600 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 39717016-39717515 Setaria italica
Seita.1G340600 0.5kb downstream 0.5kb downstream 2817 true scaffold_1: 39717516-39720332 Setaria italica
Seita.1G340600 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 39719833-39720332 Setaria italica
Seita.1G340600 1.0kb upstream 1.0kb upstream 3317 true scaffold_1: 39716516-39719832 Setaria italica
Seita.1G340600 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 39716516-39717515 Setaria italica
Seita.1G340600 1.0kb downstream 1.0kb downstream 3317 true scaffold_1: 39717516-39720832 Setaria italica
Seita.1G340600 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 39719833-39720832 Setaria italica
Seita.1G340600 2.0kb upstream 2.0kb upstream 4317 true scaffold_1: 39715516-39719832 Setaria italica
Seita.1G340600 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 39715516-39717515 Setaria italica
Seita.1G340600 2.0kb downstream 2.0kb downstream 4317 true scaffold_1: 39717516-39721832 Setaria italica
Seita.1G340600 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 39719833-39721832 Setaria italica
Seita.1G340600 5.0kb upstream 5.0kb upstream 7317 true scaffold_1: 39712516-39719832 Setaria italica
Seita.1G340600 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 39712516-39717515 Setaria italica
Seita.1G340600 5.0kb downstream 5.0kb downstream 7317 true scaffold_1: 39717516-39724832 Setaria italica
Seita.1G340600 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 39719833-39724832 Setaria italica
Seita.1G340600 10.0kb upstream 10.0kb upstream 12317 true scaffold_1: 39707516-39719832 Setaria italica
Seita.1G340600 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 39707516-39717515 Setaria italica
Seita.1G340600 10.0kb downstream 10.0kb downstream 12317 true scaffold_1: 39717516-39729832 Setaria italica
Seita.1G340600 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 39719833-39729832 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026756 5273 Angiosperm View MSA
122194332 5267 Panicoideae View MSA
124573238 5269 Grass View MSA
121296533 5274 Embryophyte View MSA
123334681 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.768        
cufflinks 1.142        
cufflinks 0.19       Low
cufflinks 0.276       Low
cufflinks 0.293       Low
cufflinks 1.36        
cufflinks 0.543        
cufflinks 0.758        
cufflinks 0.33       Low
cufflinks 4.948       High
cufflinks 1.885        
cufflinks 2.094        
cufflinks 4.466       High
cufflinks 2.058        
cufflinks 2.272        
cufflinks 1.05        
cufflinks 3.687       High
cufflinks 0.53        
cufflinks 1.14        
cufflinks 3.295       High

0 Strain