Gene : Seita.1G343400 S. italica v2.2
Defline:  (1 of 1) PTHR13068:SF8 - EXPRESSED PROTEIN Genomic Order:  3434
Name:  ? Seita.1G343400 Secondary Identifier:  ? PAC:32695258
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G343400 0.5kb upstream 0.5kb upstream 3233 true scaffold_1: 39912895-39916127 Setaria italica
Seita.1G343400 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 39915628-39916127 Setaria italica
Seita.1G343400 0.5kb downstream 0.5kb downstream 3233 true scaffold_1: 39912395-39915627 Setaria italica
Seita.1G343400 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 39912395-39912894 Setaria italica
Seita.1G343400 1.0kb upstream 1.0kb upstream 3733 true scaffold_1: 39912895-39916627 Setaria italica
Seita.1G343400 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 39915628-39916627 Setaria italica
Seita.1G343400 1.0kb downstream 1.0kb downstream 3733 true scaffold_1: 39911895-39915627 Setaria italica
Seita.1G343400 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 39911895-39912894 Setaria italica
Seita.1G343400 2.0kb upstream 2.0kb upstream 4733 true scaffold_1: 39912895-39917627 Setaria italica
Seita.1G343400 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 39915628-39917627 Setaria italica
Seita.1G343400 2.0kb downstream 2.0kb downstream 4733 true scaffold_1: 39910895-39915627 Setaria italica
Seita.1G343400 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 39910895-39912894 Setaria italica
Seita.1G343400 5.0kb upstream 5.0kb upstream 7733 true scaffold_1: 39912895-39920627 Setaria italica
Seita.1G343400 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 39915628-39920627 Setaria italica
Seita.1G343400 5.0kb downstream 5.0kb downstream 7733 true scaffold_1: 39907895-39915627 Setaria italica
Seita.1G343400 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 39907895-39912894 Setaria italica
Seita.1G343400 10.0kb upstream 10.0kb upstream 12733 true scaffold_1: 39912895-39925627 Setaria italica
Seita.1G343400 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 39915628-39925627 Setaria italica
Seita.1G343400 10.0kb downstream 10.0kb downstream 12733 true scaffold_1: 39902895-39915627 Setaria italica
Seita.1G343400 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 39902895-39912894 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122183142 5267 Panicoideae View MSA
124570776 5269 Grass View MSA
122041576 5273 Angiosperm View MSA
121347791 5274 Embryophyte View MSA
123427998 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.945       High
cufflinks 3.653        
cufflinks 3.198        
cufflinks 2.903        
cufflinks 2.848        
cufflinks 4.039       High
cufflinks 2.983        
cufflinks 3.315        
cufflinks 2.798        
cufflinks 2.557       Low
cufflinks 3.445        
cufflinks 3.782        
cufflinks 2.797        
cufflinks 3.286        
cufflinks 3.393        
cufflinks 3.509        
cufflinks 4.744       High
cufflinks 4.241       High
cufflinks 2.429       Low
cufflinks 3.192        

0 Strain