Gene : Seita.2G048400 S. italica v2.2
Defline:  (1 of 3) KOG3311 - Ribosomal protein S18 Genomic Order:  484
Name:  ? Seita.2G048400 Secondary Identifier:  ? PAC:32720633
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G048400 0.5kb upstream 0.5kb upstream 2991 true scaffold_2: 3869084-3872074 Setaria italica
Seita.2G048400 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 3869084-3869583 Setaria italica
Seita.2G048400 0.5kb downstream 0.5kb downstream 2991 true scaffold_2: 3869584-3872574 Setaria italica
Seita.2G048400 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 3872075-3872574 Setaria italica
Seita.2G048400 1.0kb upstream 1.0kb upstream 3491 true scaffold_2: 3868584-3872074 Setaria italica
Seita.2G048400 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 3868584-3869583 Setaria italica
Seita.2G048400 1.0kb downstream 1.0kb downstream 3491 true scaffold_2: 3869584-3873074 Setaria italica
Seita.2G048400 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 3872075-3873074 Setaria italica
Seita.2G048400 2.0kb upstream 2.0kb upstream 4491 true scaffold_2: 3867584-3872074 Setaria italica
Seita.2G048400 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 3867584-3869583 Setaria italica
Seita.2G048400 2.0kb downstream 2.0kb downstream 4491 true scaffold_2: 3869584-3874074 Setaria italica
Seita.2G048400 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 3872075-3874074 Setaria italica
Seita.2G048400 5.0kb upstream 5.0kb upstream 7491 true scaffold_2: 3864584-3872074 Setaria italica
Seita.2G048400 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 3864584-3869583 Setaria italica
Seita.2G048400 5.0kb downstream 5.0kb downstream 7491 true scaffold_2: 3869584-3877074 Setaria italica
Seita.2G048400 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 3872075-3877074 Setaria italica
Seita.2G048400 10.0kb upstream 10.0kb upstream 12491 true scaffold_2: 3859584-3872074 Setaria italica
Seita.2G048400 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 3859584-3869583 Setaria italica
Seita.2G048400 10.0kb downstream 10.0kb downstream 12491 true scaffold_2: 3869584-3882074 Setaria italica
Seita.2G048400 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 3872075-3882074 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122194592 5267 Panicoideae View MSA
124588686 5269 Grass View MSA
122048414 5273 Angiosperm View MSA
121348769 5274 Embryophyte View MSA
123423828 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 71.779     High  
cufflinks 78.454     High  
cufflinks 16.134     High Low
cufflinks 12.945     High Low
cufflinks 23.129     High Low
cufflinks 88.164     High  
cufflinks 74.671     High  
cufflinks 139.266     High High
cufflinks 98.312     High  
cufflinks 209.138     High High
cufflinks 69.856     High  
cufflinks 84.867     High  
cufflinks 62.342     High  
cufflinks 36.059     High  
cufflinks 81.914     High  
cufflinks 48.523     High  
cufflinks 127.611     High High
cufflinks 46.814     High  
cufflinks 22.602     High Low
cufflinks 105.65     High  

0 Strain