Gene : Seita.2G054600 S. italica v2.2
Defline:  (1 of 2) 2.7.7.3 - Pantetheine-phosphate adenylyltransferase / PPAT Genomic Order:  546
Name:  ? Seita.2G054600 Secondary Identifier:  ? PAC:32718285
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica COA-PWY Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G054600 0.5kb upstream 0.5kb upstream 2708 true scaffold_2: 4345253-4347960 Setaria italica
Seita.2G054600 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 4347461-4347960 Setaria italica
Seita.2G054600 0.5kb downstream 0.5kb downstream 2708 true scaffold_2: 4344753-4347460 Setaria italica
Seita.2G054600 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 4344753-4345252 Setaria italica
Seita.2G054600 1.0kb upstream 1.0kb upstream 3208 true scaffold_2: 4345253-4348460 Setaria italica
Seita.2G054600 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 4347461-4348460 Setaria italica
Seita.2G054600 1.0kb downstream 1.0kb downstream 3208 true scaffold_2: 4344253-4347460 Setaria italica
Seita.2G054600 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 4344253-4345252 Setaria italica
Seita.2G054600 2.0kb upstream 2.0kb upstream 4208 true scaffold_2: 4345253-4349460 Setaria italica
Seita.2G054600 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 4347461-4349460 Setaria italica
Seita.2G054600 2.0kb downstream 2.0kb downstream 4208 true scaffold_2: 4343253-4347460 Setaria italica
Seita.2G054600 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 4343253-4345252 Setaria italica
Seita.2G054600 5.0kb upstream 5.0kb upstream 7208 true scaffold_2: 4345253-4352460 Setaria italica
Seita.2G054600 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 4347461-4352460 Setaria italica
Seita.2G054600 5.0kb downstream 5.0kb downstream 7208 true scaffold_2: 4340253-4347460 Setaria italica
Seita.2G054600 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 4340253-4345252 Setaria italica
Seita.2G054600 10.0kb upstream 10.0kb upstream 12208 true scaffold_2: 4345253-4357460 Setaria italica
Seita.2G054600 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 4347461-4357460 Setaria italica
Seita.2G054600 10.0kb downstream 10.0kb downstream 12208 true scaffold_2: 4335253-4347460 Setaria italica
Seita.2G054600 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 4335253-4345252 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122187849 5267 Panicoideae View MSA
124580245 5269 Grass View MSA
122050871 5273 Angiosperm View MSA
121345308 5274 Embryophyte View MSA
123425957 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.979       Low
cufflinks 4.014       Low
cufflinks 7.487        
cufflinks 7.901        
cufflinks 4.775        
cufflinks 5.243        
cufflinks 5.806        
cufflinks 7.113        
cufflinks 4.218       Low
cufflinks 6.705        
cufflinks 2.823       Low
cufflinks 9.846        
cufflinks 12.496       High
cufflinks 7.889        
cufflinks 10.528        
cufflinks 6.633        
cufflinks 15.312     High High
cufflinks 3.935       Low
cufflinks 7.635        
cufflinks 13.614       High

0 Strain