Gene : Seita.2G062600 S. italica v2.2
Defline:  (1 of 2) KOG0109 - RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains Genomic Order:  626
Name:  ? Seita.2G062600 Secondary Identifier:  ? PAC:32720259
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G062600 0.5kb upstream 0.5kb upstream 4473 true scaffold_2: 5192800-5197272 Setaria italica
Seita.2G062600 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 5196773-5197272 Setaria italica
Seita.2G062600 0.5kb downstream 0.5kb downstream 4473 true scaffold_2: 5192300-5196772 Setaria italica
Seita.2G062600 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 5192300-5192799 Setaria italica
Seita.2G062600 1.0kb upstream 1.0kb upstream 4973 true scaffold_2: 5192800-5197772 Setaria italica
Seita.2G062600 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 5196773-5197772 Setaria italica
Seita.2G062600 1.0kb downstream 1.0kb downstream 4973 true scaffold_2: 5191800-5196772 Setaria italica
Seita.2G062600 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 5191800-5192799 Setaria italica
Seita.2G062600 2.0kb upstream 2.0kb upstream 5973 true scaffold_2: 5192800-5198772 Setaria italica
Seita.2G062600 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 5196773-5198772 Setaria italica
Seita.2G062600 2.0kb downstream 2.0kb downstream 5973 true scaffold_2: 5190800-5196772 Setaria italica
Seita.2G062600 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 5190800-5192799 Setaria italica
Seita.2G062600 5.0kb upstream 5.0kb upstream 8973 true scaffold_2: 5192800-5201772 Setaria italica
Seita.2G062600 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 5196773-5201772 Setaria italica
Seita.2G062600 5.0kb downstream 5.0kb downstream 8973 true scaffold_2: 5187800-5196772 Setaria italica
Seita.2G062600 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 5187800-5192799 Setaria italica
Seita.2G062600 10.0kb upstream 10.0kb upstream 13973 true scaffold_2: 5192800-5206772 Setaria italica
Seita.2G062600 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 5196773-5206772 Setaria italica
Seita.2G062600 10.0kb downstream 10.0kb downstream 13973 true scaffold_2: 5182800-5196772 Setaria italica
Seita.2G062600 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 5182800-5192799 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122195178 5267 Panicoideae View MSA
124588129 5269 Grass View MSA
122049541 5273 Angiosperm View MSA
123429142 5275 Viridiplantae View MSA
121349952 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.807        
cufflinks 20.722     High High
cufflinks 13.988     High  
cufflinks 13.018     High  
cufflinks 11.908     High  
cufflinks 20.73     High High
cufflinks 10.678        
cufflinks 14.931     High  
cufflinks 15.429     High  
cufflinks 6.904       Low
cufflinks 12.166        
cufflinks 16.168     High  
cufflinks 9.448       Low
cufflinks 16.451     High  
cufflinks 13.356        
cufflinks 10.889        
cufflinks 14.549     High  
cufflinks 19.634     High High
cufflinks 12.399     High  
cufflinks 13.75        

0 Strain