Gene : Seita.2G066900 S. italica v2.2
Defline:  (1 of 1) 1.2.1.27 - Methylmalonate-semialdehyde dehydrogenase (CoA acylating) / MSDH Genomic Order:  669
Name:  ? Seita.2G066900 Secondary Identifier:  ? PAC:32719728
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica VALDEG-PWY Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G066900 0.5kb upstream 0.5kb upstream 8913 true scaffold_2: 5529865-5538777 Setaria italica
Seita.2G066900 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 5529865-5530364 Setaria italica
Seita.2G066900 0.5kb downstream 0.5kb downstream 8913 true scaffold_2: 5530365-5539277 Setaria italica
Seita.2G066900 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 5538778-5539277 Setaria italica
Seita.2G066900 1.0kb upstream 1.0kb upstream 9413 true scaffold_2: 5529365-5538777 Setaria italica
Seita.2G066900 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 5529365-5530364 Setaria italica
Seita.2G066900 1.0kb downstream 1.0kb downstream 9413 true scaffold_2: 5530365-5539777 Setaria italica
Seita.2G066900 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 5538778-5539777 Setaria italica
Seita.2G066900 2.0kb upstream 2.0kb upstream 10413 true scaffold_2: 5528365-5538777 Setaria italica
Seita.2G066900 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 5528365-5530364 Setaria italica
Seita.2G066900 2.0kb downstream 2.0kb downstream 10413 true scaffold_2: 5530365-5540777 Setaria italica
Seita.2G066900 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 5538778-5540777 Setaria italica
Seita.2G066900 5.0kb upstream 5.0kb upstream 13413 true scaffold_2: 5525365-5538777 Setaria italica
Seita.2G066900 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 5525365-5530364 Setaria italica
Seita.2G066900 5.0kb downstream 5.0kb downstream 13413 true scaffold_2: 5530365-5543777 Setaria italica
Seita.2G066900 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 5538778-5543777 Setaria italica
Seita.2G066900 10.0kb upstream 10.0kb upstream 18413 true scaffold_2: 5520365-5538777 Setaria italica
Seita.2G066900 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 5520365-5530364 Setaria italica
Seita.2G066900 10.0kb downstream 10.0kb downstream 18413 true scaffold_2: 5530365-5548777 Setaria italica
Seita.2G066900 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 5538778-5548777 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122191677 5267 Panicoideae View MSA
124575306 5269 Grass View MSA
122044147 5273 Angiosperm View MSA
121345604 5274 Embryophyte View MSA
123424668 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 28.914     High  
cufflinks 10.556       Low
cufflinks 26.303     High  
cufflinks 28.854     High  
cufflinks 16.981     High  
cufflinks 11.633       Low
cufflinks 10.917       Low
cufflinks 12.24       Low
cufflinks 11.238       Low
cufflinks 33.57     High High
cufflinks 23.951     High  
cufflinks 21.687     High  
cufflinks 40.164     High High
cufflinks 13.28        
cufflinks 18.924     High  
cufflinks 13.631     High  
cufflinks 26.546     High  
cufflinks 25.612     High  
cufflinks 20.13     High  
cufflinks 21.369     High  

0 Strain