Gene : Seita.2G069700 S. italica v2.2
Defline:  (1 of 1) PTHR35460:SF1 - TRANSLATION ELONGATION FACTOR EF-1 ALPHA Genomic Order:  697
Name:  ? Seita.2G069700 Secondary Identifier:  ? PAC:32723576
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G069700 0.5kb upstream 0.5kb upstream 11540 true scaffold_2: 5788649-5800188 Setaria italica
Seita.2G069700 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 5788649-5789148 Setaria italica
Seita.2G069700 0.5kb downstream 0.5kb downstream 11540 true scaffold_2: 5789149-5800688 Setaria italica
Seita.2G069700 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 5800189-5800688 Setaria italica
Seita.2G069700 1.0kb upstream 1.0kb upstream 12040 true scaffold_2: 5788149-5800188 Setaria italica
Seita.2G069700 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 5788149-5789148 Setaria italica
Seita.2G069700 1.0kb downstream 1.0kb downstream 12040 true scaffold_2: 5789149-5801188 Setaria italica
Seita.2G069700 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 5800189-5801188 Setaria italica
Seita.2G069700 2.0kb upstream 2.0kb upstream 13040 true scaffold_2: 5787149-5800188 Setaria italica
Seita.2G069700 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 5787149-5789148 Setaria italica
Seita.2G069700 2.0kb downstream 2.0kb downstream 13040 true scaffold_2: 5789149-5802188 Setaria italica
Seita.2G069700 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 5800189-5802188 Setaria italica
Seita.2G069700 5.0kb upstream 5.0kb upstream 16040 true scaffold_2: 5784149-5800188 Setaria italica
Seita.2G069700 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 5784149-5789148 Setaria italica
Seita.2G069700 5.0kb downstream 5.0kb downstream 16040 true scaffold_2: 5789149-5805188 Setaria italica
Seita.2G069700 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 5800189-5805188 Setaria italica
Seita.2G069700 10.0kb upstream 10.0kb upstream 21040 true scaffold_2: 5779149-5800188 Setaria italica
Seita.2G069700 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 5779149-5789148 Setaria italica
Seita.2G069700 10.0kb downstream 10.0kb downstream 21040 true scaffold_2: 5789149-5810188 Setaria italica
Seita.2G069700 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 5800189-5810188 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189840 5267 Panicoideae View MSA
124570106 5269 Grass View MSA
122047135 5273 Angiosperm View MSA
121347287 5274 Embryophyte View MSA
123428083 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.83        
cufflinks 5.202        
cufflinks 1.655       Low
cufflinks 1.066       Low
cufflinks 2.012        
cufflinks 4.7        
cufflinks 3.192        
cufflinks 3.075        
cufflinks 3.435        
cufflinks 4.81        
cufflinks 4.994        
cufflinks 3.9        
cufflinks 2.601        
cufflinks 2.417        
cufflinks 4.222        
cufflinks 3.455        
cufflinks 3.89        
cufflinks 5.36       High
cufflinks 0.803       Low
cufflinks 3.969        

0 Strain