Gene : Seita.2G078300 S. italica v2.2
Defline:  (1 of 2) PTHR21495//PTHR21495:SF57 - NUCLEOPORIN-RELATED Genomic Order:  783
Name:  ? Seita.2G078300 Secondary Identifier:  ? PAC:32722549
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G078300 0.5kb upstream 0.5kb upstream 3075 true scaffold_2: 6602126-6605200 Setaria italica
Seita.2G078300 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 6602126-6602625 Setaria italica
Seita.2G078300 0.5kb downstream 0.5kb downstream 3075 true scaffold_2: 6602626-6605700 Setaria italica
Seita.2G078300 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 6605201-6605700 Setaria italica
Seita.2G078300 1.0kb upstream 1.0kb upstream 3575 true scaffold_2: 6601626-6605200 Setaria italica
Seita.2G078300 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 6601626-6602625 Setaria italica
Seita.2G078300 1.0kb downstream 1.0kb downstream 3575 true scaffold_2: 6602626-6606200 Setaria italica
Seita.2G078300 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 6605201-6606200 Setaria italica
Seita.2G078300 2.0kb upstream 2.0kb upstream 4575 true scaffold_2: 6600626-6605200 Setaria italica
Seita.2G078300 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 6600626-6602625 Setaria italica
Seita.2G078300 2.0kb downstream 2.0kb downstream 4575 true scaffold_2: 6602626-6607200 Setaria italica
Seita.2G078300 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 6605201-6607200 Setaria italica
Seita.2G078300 5.0kb upstream 5.0kb upstream 7575 true scaffold_2: 6597626-6605200 Setaria italica
Seita.2G078300 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 6597626-6602625 Setaria italica
Seita.2G078300 5.0kb downstream 5.0kb downstream 7575 true scaffold_2: 6602626-6610200 Setaria italica
Seita.2G078300 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 6605201-6610200 Setaria italica
Seita.2G078300 10.0kb upstream 10.0kb upstream 12575 true scaffold_2: 6592626-6605200 Setaria italica
Seita.2G078300 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 6592626-6602625 Setaria italica
Seita.2G078300 10.0kb downstream 10.0kb downstream 12575 true scaffold_2: 6602626-6615200 Setaria italica
Seita.2G078300 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 6605201-6615200 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122031282 5273 Angiosperm View MSA
122176101 5267 Panicoideae View MSA
124585491 5269 Grass View MSA
121351582 5274 Embryophyte View MSA
123382236 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.637        
cufflinks 1.282        
cufflinks 0.007     Low Low
cufflinks 0.062     Low  
cufflinks 2.143        
cufflinks 1.529        
cufflinks 18.348     High High
cufflinks 30.651     High High
cufflinks 19.454     High High
cufflinks 4.453        
cufflinks 0.634        
cufflinks 0.007     Low Low
cufflinks 0.026     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.098     Low  
cufflinks 3.022        
cufflinks 0.026     Low Low
cufflinks 0.473        
cufflinks 0.362        
cufflinks 0.019     Low Low

0 Strain