Gene : Seita.2G078900 S. italica v2.2
Defline:  (1 of 1) PTHR10804//PTHR10804:SF90 - PROTEASE FAMILY M24 METHIONYL AMINOPEPTIDASE, AMINOPEPTIDASE P Genomic Order:  789
Name:  ? Seita.2G078900 Secondary Identifier:  ? PAC:32722819
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G078900 0.5kb upstream 0.5kb upstream 7299 true scaffold_2: 6749790-6757088 Setaria italica
Seita.2G078900 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 6756589-6757088 Setaria italica
Seita.2G078900 0.5kb downstream 0.5kb downstream 7299 true scaffold_2: 6749290-6756588 Setaria italica
Seita.2G078900 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 6749290-6749789 Setaria italica
Seita.2G078900 1.0kb upstream 1.0kb upstream 7799 true scaffold_2: 6749790-6757588 Setaria italica
Seita.2G078900 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 6756589-6757588 Setaria italica
Seita.2G078900 1.0kb downstream 1.0kb downstream 7799 true scaffold_2: 6748790-6756588 Setaria italica
Seita.2G078900 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 6748790-6749789 Setaria italica
Seita.2G078900 2.0kb upstream 2.0kb upstream 8799 true scaffold_2: 6749790-6758588 Setaria italica
Seita.2G078900 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 6756589-6758588 Setaria italica
Seita.2G078900 2.0kb downstream 2.0kb downstream 8799 true scaffold_2: 6747790-6756588 Setaria italica
Seita.2G078900 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 6747790-6749789 Setaria italica
Seita.2G078900 5.0kb upstream 5.0kb upstream 11799 true scaffold_2: 6749790-6761588 Setaria italica
Seita.2G078900 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 6756589-6761588 Setaria italica
Seita.2G078900 5.0kb downstream 5.0kb downstream 11799 true scaffold_2: 6744790-6756588 Setaria italica
Seita.2G078900 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 6744790-6749789 Setaria italica
Seita.2G078900 10.0kb upstream 10.0kb upstream 16799 true scaffold_2: 6749790-6766588 Setaria italica
Seita.2G078900 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 6756589-6766588 Setaria italica
Seita.2G078900 10.0kb downstream 10.0kb downstream 16799 true scaffold_2: 6739790-6756588 Setaria italica
Seita.2G078900 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 6739790-6749789 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122175124 5267 Panicoideae View MSA
124584916 5269 Grass View MSA
122044333 5273 Angiosperm View MSA
121348715 5274 Embryophyte View MSA
123426779 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.937        
cufflinks 1.0        
cufflinks 1.654        
cufflinks 1.292        
cufflinks 1.822        
cufflinks 1.022        
cufflinks 1.796        
cufflinks 2.023       High
cufflinks 2.946       High
cufflinks 0.503       Low
cufflinks 0.739        
cufflinks 0.509       Low
cufflinks 0.431       Low
cufflinks 2.041       High
cufflinks 0.549       Low
cufflinks 1.687        
cufflinks 0.552       Low
cufflinks 0.902        
cufflinks 1.168        
cufflinks 0.531       Low

0 Strain