Gene : Seita.2G001300 S. italica v2.2
Defline:  (1 of 1) PTHR19845//PTHR19845:SF7 - KATANIN P80 SUBUNIT Genomic Order:  13
Name:  ? Seita.2G001300 Secondary Identifier:  ? PAC:32718125
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G001300 0.5kb upstream 0.5kb upstream 5147 true scaffold_2: 73106-78252 Setaria italica
Seita.2G001300 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 73106-73605 Setaria italica
Seita.2G001300 0.5kb downstream 0.5kb downstream 5147 true scaffold_2: 73606-78752 Setaria italica
Seita.2G001300 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 78253-78752 Setaria italica
Seita.2G001300 1.0kb upstream 1.0kb upstream 5647 true scaffold_2: 72606-78252 Setaria italica
Seita.2G001300 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 72606-73605 Setaria italica
Seita.2G001300 1.0kb downstream 1.0kb downstream 5647 true scaffold_2: 73606-79252 Setaria italica
Seita.2G001300 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 78253-79252 Setaria italica
Seita.2G001300 2.0kb upstream 2.0kb upstream 6647 true scaffold_2: 71606-78252 Setaria italica
Seita.2G001300 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 71606-73605 Setaria italica
Seita.2G001300 2.0kb downstream 2.0kb downstream 6647 true scaffold_2: 73606-80252 Setaria italica
Seita.2G001300 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 78253-80252 Setaria italica
Seita.2G001300 5.0kb upstream 5.0kb upstream 9647 true scaffold_2: 68606-78252 Setaria italica
Seita.2G001300 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 68606-73605 Setaria italica
Seita.2G001300 5.0kb downstream 5.0kb downstream 9647 true scaffold_2: 73606-83252 Setaria italica
Seita.2G001300 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 78253-83252 Setaria italica
Seita.2G001300 10.0kb upstream 10.0kb upstream 14647 true scaffold_2: 63606-78252 Setaria italica
Seita.2G001300 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 63606-73605 Setaria italica
Seita.2G001300 10.0kb downstream 10.0kb downstream 14647 true scaffold_2: 73606-88252 Setaria italica
Seita.2G001300 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 78253-88252 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122199294 5267 Panicoideae View MSA
124584513 5269 Grass View MSA
122044538 5273 Angiosperm View MSA
121346276 5274 Embryophyte View MSA
123380359 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.985        
cufflinks 2.448        
cufflinks 2.553       High
cufflinks 1.983        
cufflinks 1.648       Low
cufflinks 2.398        
cufflinks 2.174        
cufflinks 2.406        
cufflinks 1.796        
cufflinks 1.16       Low
cufflinks 1.718        
cufflinks 2.149        
cufflinks 1.772        
cufflinks 2.34        
cufflinks 2.32        
cufflinks 2.498        
cufflinks 2.268        
cufflinks 2.467        
cufflinks 1.748        
cufflinks 2.27        

0 Strain