Gene : Seita.2G002900 S. italica v2.2
Defline:  (1 of 1) PTHR21704 - NIPPED-B-LIKE PROTEIN DELANGIN SCC2-RELATED Genomic Order:  29
Name:  ? Seita.2G002900 Secondary Identifier:  ? PAC:32718983
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G002900 0.5kb upstream 0.5kb upstream 13955 true scaffold_2: 171813-185767 Setaria italica
Seita.2G002900 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 171813-172312 Setaria italica
Seita.2G002900 0.5kb downstream 0.5kb downstream 13955 true scaffold_2: 172313-186267 Setaria italica
Seita.2G002900 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 185768-186267 Setaria italica
Seita.2G002900 1.0kb upstream 1.0kb upstream 14455 true scaffold_2: 171313-185767 Setaria italica
Seita.2G002900 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 171313-172312 Setaria italica
Seita.2G002900 1.0kb downstream 1.0kb downstream 14455 true scaffold_2: 172313-186767 Setaria italica
Seita.2G002900 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 185768-186767 Setaria italica
Seita.2G002900 2.0kb upstream 2.0kb upstream 15455 true scaffold_2: 170313-185767 Setaria italica
Seita.2G002900 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 170313-172312 Setaria italica
Seita.2G002900 2.0kb downstream 2.0kb downstream 15455 true scaffold_2: 172313-187767 Setaria italica
Seita.2G002900 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 185768-187767 Setaria italica
Seita.2G002900 5.0kb upstream 5.0kb upstream 18455 true scaffold_2: 167313-185767 Setaria italica
Seita.2G002900 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 167313-172312 Setaria italica
Seita.2G002900 5.0kb downstream 5.0kb downstream 18455 true scaffold_2: 172313-190767 Setaria italica
Seita.2G002900 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 185768-190767 Setaria italica
Seita.2G002900 10.0kb upstream 10.0kb upstream 23455 true scaffold_2: 162313-185767 Setaria italica
Seita.2G002900 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 162313-172312 Setaria italica
Seita.2G002900 10.0kb downstream 10.0kb downstream 23455 true scaffold_2: 172313-195767 Setaria italica
Seita.2G002900 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 185768-195767 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122190933 5267 Panicoideae View MSA
124582097 5269 Grass View MSA
122046919 5273 Angiosperm View MSA
121344731 5274 Embryophyte View MSA
123425970 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.278       High
cufflinks 10.365        
cufflinks 11.198     High High
cufflinks 7.951        
cufflinks 6.014       Low
cufflinks 10.3        
cufflinks 10.242        
cufflinks 6.508       Low
cufflinks 6.522       Low
cufflinks 5.092       Low
cufflinks 9.389        
cufflinks 7.853        
cufflinks 8.431        
cufflinks 7.908        
cufflinks 10.947       High
cufflinks 11.695       High
cufflinks 7.483        
cufflinks 10.007        
cufflinks 6.958        
cufflinks 8.31        

0 Strain