Gene : Seita.2G021800 S. italica v2.2
Defline:  (1 of 1) PF16669 - Tetratricopeptide repeat protein 5 OB fold domain (TTC5_OB) Genomic Order:  218
Name:  ? Seita.2G021800 Secondary Identifier:  ? PAC:32719250
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G021800 0.5kb upstream 0.5kb upstream 7547 true scaffold_2: 1776824-1784370 Setaria italica
Seita.2G021800 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 1783871-1784370 Setaria italica
Seita.2G021800 0.5kb downstream 0.5kb downstream 7547 true scaffold_2: 1776324-1783870 Setaria italica
Seita.2G021800 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 1776324-1776823 Setaria italica
Seita.2G021800 1.0kb upstream 1.0kb upstream 8047 true scaffold_2: 1776824-1784870 Setaria italica
Seita.2G021800 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 1783871-1784870 Setaria italica
Seita.2G021800 1.0kb downstream 1.0kb downstream 8047 true scaffold_2: 1775824-1783870 Setaria italica
Seita.2G021800 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 1775824-1776823 Setaria italica
Seita.2G021800 2.0kb upstream 2.0kb upstream 9047 true scaffold_2: 1776824-1785870 Setaria italica
Seita.2G021800 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 1783871-1785870 Setaria italica
Seita.2G021800 2.0kb downstream 2.0kb downstream 9047 true scaffold_2: 1774824-1783870 Setaria italica
Seita.2G021800 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 1774824-1776823 Setaria italica
Seita.2G021800 5.0kb upstream 5.0kb upstream 12047 true scaffold_2: 1776824-1788870 Setaria italica
Seita.2G021800 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 1783871-1788870 Setaria italica
Seita.2G021800 5.0kb downstream 5.0kb downstream 12047 true scaffold_2: 1771824-1783870 Setaria italica
Seita.2G021800 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 1771824-1776823 Setaria italica
Seita.2G021800 10.0kb upstream 10.0kb upstream 17047 true scaffold_2: 1776824-1793870 Setaria italica
Seita.2G021800 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 1783871-1793870 Setaria italica
Seita.2G021800 10.0kb downstream 10.0kb downstream 17047 true scaffold_2: 1766824-1783870 Setaria italica
Seita.2G021800 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 1766824-1776823 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122190728 5267 Panicoideae View MSA
124583284 5269 Grass View MSA
122048209 5273 Angiosperm View MSA
121349212 5274 Embryophyte View MSA
123425821 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.308        
cufflinks 1.46       High
cufflinks 0.978        
cufflinks 0.892        
cufflinks 0.72       Low
cufflinks 1.665       High
cufflinks 1.077        
cufflinks 1.406        
cufflinks 0.915        
cufflinks 0.831       Low
cufflinks 1.076        
cufflinks 1.283        
cufflinks 1.13        
cufflinks 0.8       Low
cufflinks 1.041        
cufflinks 1.545       High
cufflinks 1.243        
cufflinks 1.799       High
cufflinks 0.742       Low
cufflinks 1.188        

0 Strain