Gene : Seita.2G025800 S. italica v2.2
Defline:  (1 of 49) PF00069//PF00139 - Protein kinase domain (Pkinase) // Legume lectin domain (Lectin_legB) Genomic Order:  258
Name:  ? Seita.2G025800 Secondary Identifier:  ? PAC:32720792
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G025800 0.5kb upstream 0.5kb upstream 2210 true scaffold_2: 2056473-2058682 Setaria italica
Seita.2G025800 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 2058183-2058682 Setaria italica
Seita.2G025800 0.5kb downstream 0.5kb downstream 2210 true scaffold_2: 2055973-2058182 Setaria italica
Seita.2G025800 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 2055973-2056472 Setaria italica
Seita.2G025800 1.0kb upstream 1.0kb upstream 2710 true scaffold_2: 2056473-2059182 Setaria italica
Seita.2G025800 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 2058183-2059182 Setaria italica
Seita.2G025800 1.0kb downstream 1.0kb downstream 2710 true scaffold_2: 2055473-2058182 Setaria italica
Seita.2G025800 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 2055473-2056472 Setaria italica
Seita.2G025800 2.0kb upstream 2.0kb upstream 3710 true scaffold_2: 2056473-2060182 Setaria italica
Seita.2G025800 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 2058183-2060182 Setaria italica
Seita.2G025800 2.0kb downstream 2.0kb downstream 3710 true scaffold_2: 2054473-2058182 Setaria italica
Seita.2G025800 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 2054473-2056472 Setaria italica
Seita.2G025800 5.0kb upstream 5.0kb upstream 6710 true scaffold_2: 2056473-2063182 Setaria italica
Seita.2G025800 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 2058183-2063182 Setaria italica
Seita.2G025800 5.0kb downstream 5.0kb downstream 6710 true scaffold_2: 2051473-2058182 Setaria italica
Seita.2G025800 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 2051473-2056472 Setaria italica
Seita.2G025800 10.0kb upstream 10.0kb upstream 11710 true scaffold_2: 2056473-2068182 Setaria italica
Seita.2G025800 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 2058183-2068182 Setaria italica
Seita.2G025800 10.0kb downstream 10.0kb downstream 11710 true scaffold_2: 2046473-2058182 Setaria italica
Seita.2G025800 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 2046473-2056472 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122176035 5267 Panicoideae View MSA
124569852 5269 Grass View MSA
122049329 5273 Angiosperm View MSA
123429169 5275 Viridiplantae View MSA
121351748 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.401        
cufflinks 1.196       Low
cufflinks 20.97     High High
cufflinks 15.98     High  
cufflinks 14.941     High  
cufflinks 1.656       Low
cufflinks 8.995        
cufflinks 5.937        
cufflinks 6.523        
cufflinks 5.244        
cufflinks 4.239        
cufflinks 6.221        
cufflinks 11.715        
cufflinks 28.14     High High
cufflinks 10.046        
cufflinks 1.259       Low
cufflinks 10.098        
cufflinks 0.838       Low
cufflinks 16.222     High  
cufflinks 9.463        

0 Strain