Gene : Seita.2G030000 S. italica v2.2
Defline:  (1 of 1) PTHR24031:SF326 - DEAD-BOX ATP-DEPENDENT RNA HELICASE 53-RELATED Genomic Order:  300
Name:  ? Seita.2G030000 Secondary Identifier:  ? PAC:32721102
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G030000 0.5kb upstream 0.5kb upstream 4066 true scaffold_2: 2431630-2435695 Setaria italica
Seita.2G030000 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 2435196-2435695 Setaria italica
Seita.2G030000 0.5kb downstream 0.5kb downstream 4066 true scaffold_2: 2431130-2435195 Setaria italica
Seita.2G030000 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 2431130-2431629 Setaria italica
Seita.2G030000 1.0kb upstream 1.0kb upstream 4566 true scaffold_2: 2431630-2436195 Setaria italica
Seita.2G030000 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 2435196-2436195 Setaria italica
Seita.2G030000 1.0kb downstream 1.0kb downstream 4566 true scaffold_2: 2430630-2435195 Setaria italica
Seita.2G030000 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 2430630-2431629 Setaria italica
Seita.2G030000 2.0kb upstream 2.0kb upstream 5566 true scaffold_2: 2431630-2437195 Setaria italica
Seita.2G030000 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 2435196-2437195 Setaria italica
Seita.2G030000 2.0kb downstream 2.0kb downstream 5566 true scaffold_2: 2429630-2435195 Setaria italica
Seita.2G030000 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 2429630-2431629 Setaria italica
Seita.2G030000 5.0kb upstream 5.0kb upstream 8566 true scaffold_2: 2431630-2440195 Setaria italica
Seita.2G030000 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 2435196-2440195 Setaria italica
Seita.2G030000 5.0kb downstream 5.0kb downstream 8566 true scaffold_2: 2426630-2435195 Setaria italica
Seita.2G030000 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 2426630-2431629 Setaria italica
Seita.2G030000 10.0kb upstream 10.0kb upstream 13566 true scaffold_2: 2431630-2445195 Setaria italica
Seita.2G030000 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 2435196-2445195 Setaria italica
Seita.2G030000 10.0kb downstream 10.0kb downstream 13566 true scaffold_2: 2421630-2435195 Setaria italica
Seita.2G030000 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 2421630-2431629 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122176782 5267 Panicoideae View MSA
124571216 5269 Grass View MSA
122044594 5273 Angiosperm View MSA
121310318 5274 Embryophyte View MSA
123426449 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.784       High
cufflinks 4.836       High
cufflinks 4.067        
cufflinks 3.895        
cufflinks 2.974        
cufflinks 4.417        
cufflinks 4.324        
cufflinks 2.949        
cufflinks 2.564       Low
cufflinks 2.193       Low
cufflinks 3.507        
cufflinks 3.324        
cufflinks 2.339       Low
cufflinks 3.252        
cufflinks 3.492        
cufflinks 5.064       High
cufflinks 3.522        
cufflinks 5.598       High
cufflinks 3.183        
cufflinks 3.633        

0 Strain