Gene : Seita.2G043100 S. italica v2.2
Defline:  (1 of 1) PTHR11451//PTHR11451:SF6 - TRNA SYNTHETASE-RELATED Genomic Order:  431
Name:  ? Seita.2G043100 Secondary Identifier:  ? PAC:32718465
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica TRNA-CHARGING-PWY Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G043100 0.5kb upstream 0.5kb upstream 5073 true scaffold_2: 3469102-3474174 Setaria italica
Seita.2G043100 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 3469102-3469601 Setaria italica
Seita.2G043100 0.5kb downstream 0.5kb downstream 5073 true scaffold_2: 3469602-3474674 Setaria italica
Seita.2G043100 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 3474175-3474674 Setaria italica
Seita.2G043100 1.0kb upstream 1.0kb upstream 5573 true scaffold_2: 3468602-3474174 Setaria italica
Seita.2G043100 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 3468602-3469601 Setaria italica
Seita.2G043100 1.0kb downstream 1.0kb downstream 5573 true scaffold_2: 3469602-3475174 Setaria italica
Seita.2G043100 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 3474175-3475174 Setaria italica
Seita.2G043100 2.0kb upstream 2.0kb upstream 6573 true scaffold_2: 3467602-3474174 Setaria italica
Seita.2G043100 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 3467602-3469601 Setaria italica
Seita.2G043100 2.0kb downstream 2.0kb downstream 6573 true scaffold_2: 3469602-3476174 Setaria italica
Seita.2G043100 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 3474175-3476174 Setaria italica
Seita.2G043100 5.0kb upstream 5.0kb upstream 9573 true scaffold_2: 3464602-3474174 Setaria italica
Seita.2G043100 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 3464602-3469601 Setaria italica
Seita.2G043100 5.0kb downstream 5.0kb downstream 9573 true scaffold_2: 3469602-3479174 Setaria italica
Seita.2G043100 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 3474175-3479174 Setaria italica
Seita.2G043100 10.0kb upstream 10.0kb upstream 14573 true scaffold_2: 3459602-3474174 Setaria italica
Seita.2G043100 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 3459602-3469601 Setaria italica
Seita.2G043100 10.0kb downstream 10.0kb downstream 14573 true scaffold_2: 3469602-3484174 Setaria italica
Seita.2G043100 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 3474175-3484174 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122179040 5267 Panicoideae View MSA
124581859 5269 Grass View MSA
122044069 5273 Angiosperm View MSA
121345199 5274 Embryophyte View MSA
123428629 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.682        
cufflinks 4.343        
cufflinks 4.971        
cufflinks 4.361        
cufflinks 7.304        
cufflinks 4.597        
cufflinks 9.828       High
cufflinks 10.363       High
cufflinks 17.979     High High
cufflinks 3.544        
cufflinks 4.026        
cufflinks 3.47        
cufflinks 2.998       Low
cufflinks 5.563        
cufflinks 3.06       Low
cufflinks 8.53       High
cufflinks 3.877        
cufflinks 4.782        
cufflinks 4.399        
cufflinks 3.081       Low

0 Strain