Gene : Seita.2G046700 S. italica v2.2
Defline:  (1 of 1) PTHR11943 - GALACTOSE-1-PHOSPHATE URIDYLYLTRANSFERASE Genomic Order:  467
Name:  ? Seita.2G046700 Secondary Identifier:  ? PAC:32718395
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G046700 0.5kb upstream 0.5kb upstream 5414 true scaffold_2: 3756263-3761676 Setaria italica
Seita.2G046700 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 3761177-3761676 Setaria italica
Seita.2G046700 0.5kb downstream 0.5kb downstream 5414 true scaffold_2: 3755763-3761176 Setaria italica
Seita.2G046700 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 3755763-3756262 Setaria italica
Seita.2G046700 1.0kb upstream 1.0kb upstream 5914 true scaffold_2: 3756263-3762176 Setaria italica
Seita.2G046700 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 3761177-3762176 Setaria italica
Seita.2G046700 1.0kb downstream 1.0kb downstream 5914 true scaffold_2: 3755263-3761176 Setaria italica
Seita.2G046700 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 3755263-3756262 Setaria italica
Seita.2G046700 2.0kb upstream 2.0kb upstream 6914 true scaffold_2: 3756263-3763176 Setaria italica
Seita.2G046700 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 3761177-3763176 Setaria italica
Seita.2G046700 2.0kb downstream 2.0kb downstream 6914 true scaffold_2: 3754263-3761176 Setaria italica
Seita.2G046700 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 3754263-3756262 Setaria italica
Seita.2G046700 5.0kb upstream 5.0kb upstream 9914 true scaffold_2: 3756263-3766176 Setaria italica
Seita.2G046700 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 3761177-3766176 Setaria italica
Seita.2G046700 5.0kb downstream 5.0kb downstream 9914 true scaffold_2: 3751263-3761176 Setaria italica
Seita.2G046700 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 3751263-3756262 Setaria italica
Seita.2G046700 10.0kb upstream 10.0kb upstream 14914 true scaffold_2: 3756263-3771176 Setaria italica
Seita.2G046700 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 3761177-3771176 Setaria italica
Seita.2G046700 10.0kb downstream 10.0kb downstream 14914 true scaffold_2: 3746263-3761176 Setaria italica
Seita.2G046700 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 3746263-3756262 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122177678 5267 Panicoideae View MSA
124573592 5269 Grass View MSA
122047985 5273 Angiosperm View MSA
121344081 5274 Embryophyte View MSA
123379971 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.381        
cufflinks 4.351        
cufflinks 3.222       Low
cufflinks 3.331        
cufflinks 3.244       Low
cufflinks 4.99       High
cufflinks 3.025       Low
cufflinks 4.288        
cufflinks 3.756        
cufflinks 5.212       High
cufflinks 4.068        
cufflinks 4.916       High
cufflinks 4.787        
cufflinks 3.497        
cufflinks 4.425        
cufflinks 3.124       Low
cufflinks 4.852       High
cufflinks 2.944       Low
cufflinks 3.91        
cufflinks 4.625        

0 Strain