Gene : Seita.2G125200 S. italica v2.2
Defline:  (1 of 4) PF00331//PF02018 - Glycosyl hydrolase family 10 (Glyco_hydro_10) // Carbohydrate binding domain (CBM_4_9) Genomic Order:  1252
Name:  ? Seita.2G125200 Secondary Identifier:  ? PAC:32722278
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G125200 0.5kb upstream 0.5kb upstream 7564 true scaffold_2: 14258556-14266119 Setaria italica
Seita.2G125200 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 14258556-14259055 Setaria italica
Seita.2G125200 0.5kb downstream 0.5kb downstream 7564 true scaffold_2: 14259056-14266619 Setaria italica
Seita.2G125200 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 14266120-14266619 Setaria italica
Seita.2G125200 1.0kb upstream 1.0kb upstream 8064 true scaffold_2: 14258056-14266119 Setaria italica
Seita.2G125200 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 14258056-14259055 Setaria italica
Seita.2G125200 1.0kb downstream 1.0kb downstream 8064 true scaffold_2: 14259056-14267119 Setaria italica
Seita.2G125200 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 14266120-14267119 Setaria italica
Seita.2G125200 2.0kb upstream 2.0kb upstream 9064 true scaffold_2: 14257056-14266119 Setaria italica
Seita.2G125200 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 14257056-14259055 Setaria italica
Seita.2G125200 2.0kb downstream 2.0kb downstream 9064 true scaffold_2: 14259056-14268119 Setaria italica
Seita.2G125200 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 14266120-14268119 Setaria italica
Seita.2G125200 5.0kb upstream 5.0kb upstream 12064 true scaffold_2: 14254056-14266119 Setaria italica
Seita.2G125200 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 14254056-14259055 Setaria italica
Seita.2G125200 5.0kb downstream 5.0kb downstream 12064 true scaffold_2: 14259056-14271119 Setaria italica
Seita.2G125200 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 14266120-14271119 Setaria italica
Seita.2G125200 10.0kb upstream 10.0kb upstream 17064 true scaffold_2: 14249056-14266119 Setaria italica
Seita.2G125200 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 14249056-14259055 Setaria italica
Seita.2G125200 10.0kb downstream 10.0kb downstream 17064 true scaffold_2: 14259056-14276119 Setaria italica
Seita.2G125200 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 14266120-14276119 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122198481 5267 Panicoideae View MSA
124568391 5269 Grass View MSA
122047511 5273 Angiosperm View MSA
121347321 5274 Embryophyte View MSA
123426707 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.385        
cufflinks 3.496        
cufflinks 0.754       Low
cufflinks 0.475       Low
cufflinks 0.621       Low
cufflinks 3.296        
cufflinks 2.027        
cufflinks 1.828        
cufflinks 1.656        
cufflinks 1.752        
cufflinks 3.687        
cufflinks 5.142       High
cufflinks 3.158        
cufflinks 1.161        
cufflinks 4.445       High
cufflinks 1.731        
cufflinks 4.024        
cufflinks 3.773        
cufflinks 0.796       Low
cufflinks 4.375        

0 Strain