Gene : Seita.2G135400 S. italica v2.2
Defline:  (1 of 6) PF00069//PF04564 - Protein kinase domain (Pkinase) // U-box domain (U-box) Genomic Order:  1354
Name:  ? Seita.2G135400 Secondary Identifier:  ? PAC:32719365
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-7511 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G135400 0.5kb upstream 0.5kb upstream 6476 true scaffold_2: 15564931-15571406 Setaria italica
Seita.2G135400 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 15564931-15565430 Setaria italica
Seita.2G135400 0.5kb downstream 0.5kb downstream 6476 true scaffold_2: 15565431-15571906 Setaria italica
Seita.2G135400 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 15571407-15571906 Setaria italica
Seita.2G135400 1.0kb upstream 1.0kb upstream 6976 true scaffold_2: 15564431-15571406 Setaria italica
Seita.2G135400 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 15564431-15565430 Setaria italica
Seita.2G135400 1.0kb downstream 1.0kb downstream 6976 true scaffold_2: 15565431-15572406 Setaria italica
Seita.2G135400 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 15571407-15572406 Setaria italica
Seita.2G135400 2.0kb upstream 2.0kb upstream 7976 true scaffold_2: 15563431-15571406 Setaria italica
Seita.2G135400 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 15563431-15565430 Setaria italica
Seita.2G135400 2.0kb downstream 2.0kb downstream 7976 true scaffold_2: 15565431-15573406 Setaria italica
Seita.2G135400 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 15571407-15573406 Setaria italica
Seita.2G135400 5.0kb upstream 5.0kb upstream 10976 true scaffold_2: 15560431-15571406 Setaria italica
Seita.2G135400 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 15560431-15565430 Setaria italica
Seita.2G135400 5.0kb downstream 5.0kb downstream 10976 true scaffold_2: 15565431-15576406 Setaria italica
Seita.2G135400 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 15571407-15576406 Setaria italica
Seita.2G135400 10.0kb upstream 10.0kb upstream 15976 true scaffold_2: 15555431-15571406 Setaria italica
Seita.2G135400 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 15555431-15565430 Setaria italica
Seita.2G135400 10.0kb downstream 10.0kb downstream 15976 true scaffold_2: 15565431-15581406 Setaria italica
Seita.2G135400 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 15571407-15581406 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121992712 5273 Angiosperm View MSA
122180442 5267 Panicoideae View MSA
124571326 5269 Grass View MSA
121263048 5274 Embryophyte View MSA
123301650 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.23        
cufflinks 0.155        
cufflinks 0.137        
cufflinks 0.249        
cufflinks 0.532        
cufflinks 0.258        
cufflinks 0.442        
cufflinks 0.117     Low Low
cufflinks 0.705        
cufflinks 0.359        
cufflinks 0.203        
cufflinks 6.073       High
cufflinks 0.186        
cufflinks 0.641        
cufflinks 0.421        
cufflinks 0.1     Low Low
cufflinks 1.958       High
cufflinks 0.165        
cufflinks 0.429        
cufflinks 3.952       High

0 Strain