Gene : Seita.2G140400 S. italica v2.2
Defline:  (1 of 80) PF01357 - Pollen allergen (Pollen_allerg_1) Genomic Order:  1404
Name:  ? Seita.2G140400 Secondary Identifier:  ? PAC:32718610
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G140400 0.5kb upstream 0.5kb upstream 1149 true scaffold_2: 16299802-16300950 Setaria italica
Seita.2G140400 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 16300451-16300950 Setaria italica
Seita.2G140400 0.5kb downstream 0.5kb downstream 1149 true scaffold_2: 16299302-16300450 Setaria italica
Seita.2G140400 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 16299302-16299801 Setaria italica
Seita.2G140400 1.0kb upstream 1.0kb upstream 1649 true scaffold_2: 16299802-16301450 Setaria italica
Seita.2G140400 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 16300451-16301450 Setaria italica
Seita.2G140400 1.0kb downstream 1.0kb downstream 1649 true scaffold_2: 16298802-16300450 Setaria italica
Seita.2G140400 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 16298802-16299801 Setaria italica
Seita.2G140400 2.0kb upstream 2.0kb upstream 2649 true scaffold_2: 16299802-16302450 Setaria italica
Seita.2G140400 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 16300451-16302450 Setaria italica
Seita.2G140400 2.0kb downstream 2.0kb downstream 2649 true scaffold_2: 16297802-16300450 Setaria italica
Seita.2G140400 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 16297802-16299801 Setaria italica
Seita.2G140400 5.0kb upstream 5.0kb upstream 5649 true scaffold_2: 16299802-16305450 Setaria italica
Seita.2G140400 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 16300451-16305450 Setaria italica
Seita.2G140400 5.0kb downstream 5.0kb downstream 5649 true scaffold_2: 16294802-16300450 Setaria italica
Seita.2G140400 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 16294802-16299801 Setaria italica
Seita.2G140400 10.0kb upstream 10.0kb upstream 10649 true scaffold_2: 16299802-16310450 Setaria italica
Seita.2G140400 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 16300451-16310450 Setaria italica
Seita.2G140400 10.0kb downstream 10.0kb downstream 10649 true scaffold_2: 16289802-16300450 Setaria italica
Seita.2G140400 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 16289802-16299801 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121996156 5273 Angiosperm View MSA
122199224 5267 Panicoideae View MSA
124590797 5269 Grass View MSA
121266324 5274 Embryophyte View MSA
123304666 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.36        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 1.479        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.053     Low Low

0 Strain