Gene : Seita.2G149400 S. italica v2.2
Defline:  (1 of 1) PTHR15495:SF7 - GPI INOSITOL-DEACYLASE Genomic Order:  1494
Name:  ? Seita.2G149400 Secondary Identifier:  ? PAC:32719899
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G149400 0.5kb upstream 0.5kb upstream 11490 true scaffold_2: 20362930-20374419 Setaria italica
Seita.2G149400 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 20373920-20374419 Setaria italica
Seita.2G149400 0.5kb downstream 0.5kb downstream 11490 true scaffold_2: 20362430-20373919 Setaria italica
Seita.2G149400 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 20362430-20362929 Setaria italica
Seita.2G149400 1.0kb upstream 1.0kb upstream 11990 true scaffold_2: 20362930-20374919 Setaria italica
Seita.2G149400 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 20373920-20374919 Setaria italica
Seita.2G149400 1.0kb downstream 1.0kb downstream 11990 true scaffold_2: 20361930-20373919 Setaria italica
Seita.2G149400 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 20361930-20362929 Setaria italica
Seita.2G149400 2.0kb upstream 2.0kb upstream 12990 true scaffold_2: 20362930-20375919 Setaria italica
Seita.2G149400 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 20373920-20375919 Setaria italica
Seita.2G149400 2.0kb downstream 2.0kb downstream 12990 true scaffold_2: 20360930-20373919 Setaria italica
Seita.2G149400 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 20360930-20362929 Setaria italica
Seita.2G149400 5.0kb upstream 5.0kb upstream 15990 true scaffold_2: 20362930-20378919 Setaria italica
Seita.2G149400 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 20373920-20378919 Setaria italica
Seita.2G149400 5.0kb downstream 5.0kb downstream 15990 true scaffold_2: 20357930-20373919 Setaria italica
Seita.2G149400 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 20357930-20362929 Setaria italica
Seita.2G149400 10.0kb upstream 10.0kb upstream 20990 true scaffold_2: 20362930-20383919 Setaria italica
Seita.2G149400 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 20373920-20383919 Setaria italica
Seita.2G149400 10.0kb downstream 10.0kb downstream 20990 true scaffold_2: 20352930-20373919 Setaria italica
Seita.2G149400 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 20352930-20362929 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122191080 5267 Panicoideae View MSA
124586303 5269 Grass View MSA
122041689 5273 Angiosperm View MSA
121345823 5274 Embryophyte View MSA
123380275 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 26.085     High High
cufflinks 13.148     High  
cufflinks 4.926        
cufflinks 3.339       Low
cufflinks 3.0       Low
cufflinks 11.466        
cufflinks 8.847        
cufflinks 6.086        
cufflinks 5.058        
cufflinks 9.948        
cufflinks 19.58     High High
cufflinks 6.543        
cufflinks 4.895        
cufflinks 3.537       Low
cufflinks 8.629        
cufflinks 19.56     High High
cufflinks 5.976        
cufflinks 17.817     High High
cufflinks 3.432       Low
cufflinks 6.963        

0 Strain