Gene : Seita.2G159600 S. italica v2.2
Defline:  (1 of 1) PTHR33493:SF2 - LATE EMBRYOGENESIS ABUNDANT PROTEIN 4-5 Genomic Order:  1596
Name:  ? Seita.2G159600 Secondary Identifier:  ? PAC:32719765
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G159600 0.5kb upstream 0.5kb upstream 1007 true scaffold_2: 23221269-23222275 Setaria italica
Seita.2G159600 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 23221776-23222275 Setaria italica
Seita.2G159600 0.5kb downstream 0.5kb downstream 1007 true scaffold_2: 23220769-23221775 Setaria italica
Seita.2G159600 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 23220769-23221268 Setaria italica
Seita.2G159600 1.0kb upstream 1.0kb upstream 1507 true scaffold_2: 23221269-23222775 Setaria italica
Seita.2G159600 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 23221776-23222775 Setaria italica
Seita.2G159600 1.0kb downstream 1.0kb downstream 1507 true scaffold_2: 23220269-23221775 Setaria italica
Seita.2G159600 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 23220269-23221268 Setaria italica
Seita.2G159600 2.0kb upstream 2.0kb upstream 2507 true scaffold_2: 23221269-23223775 Setaria italica
Seita.2G159600 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 23221776-23223775 Setaria italica
Seita.2G159600 2.0kb downstream 2.0kb downstream 2507 true scaffold_2: 23219269-23221775 Setaria italica
Seita.2G159600 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 23219269-23221268 Setaria italica
Seita.2G159600 5.0kb upstream 5.0kb upstream 5507 true scaffold_2: 23221269-23226775 Setaria italica
Seita.2G159600 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 23221776-23226775 Setaria italica
Seita.2G159600 5.0kb downstream 5.0kb downstream 5507 true scaffold_2: 23216269-23221775 Setaria italica
Seita.2G159600 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 23216269-23221268 Setaria italica
Seita.2G159600 10.0kb upstream 10.0kb upstream 10507 true scaffold_2: 23221269-23231775 Setaria italica
Seita.2G159600 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 23221776-23231775 Setaria italica
Seita.2G159600 10.0kb downstream 10.0kb downstream 10507 true scaffold_2: 23211269-23221775 Setaria italica
Seita.2G159600 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 23211269-23221268 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122182669 5267 Panicoideae View MSA
124584366 5269 Grass View MSA
122046443 5273 Angiosperm View MSA
121349982 5274 Embryophyte View MSA
123381528 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.024     Low Low
cufflinks 0.23        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.219        
cufflinks 0.034     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.041     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.083     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.725       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.038     Low  
cufflinks 0.0     Not Expressed Not Expressed

0 Strain