Gene : Seita.2G102400 S. italica v2.2
Defline:  (1 of 67) PF03168 - Late embryogenesis abundant protein (LEA_2) Genomic Order:  1024
Name:  ? Seita.2G102400 Secondary Identifier:  ? PAC:32718708
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G102400 0.5kb upstream 0.5kb upstream 1496 true scaffold_2: 9643427-9644922 Setaria italica
Seita.2G102400 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 9644423-9644922 Setaria italica
Seita.2G102400 0.5kb downstream 0.5kb downstream 1496 true scaffold_2: 9642927-9644422 Setaria italica
Seita.2G102400 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 9642927-9643426 Setaria italica
Seita.2G102400 1.0kb upstream 1.0kb upstream 1996 true scaffold_2: 9643427-9645422 Setaria italica
Seita.2G102400 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 9644423-9645422 Setaria italica
Seita.2G102400 1.0kb downstream 1.0kb downstream 1996 true scaffold_2: 9642427-9644422 Setaria italica
Seita.2G102400 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 9642427-9643426 Setaria italica
Seita.2G102400 2.0kb upstream 2.0kb upstream 2996 true scaffold_2: 9643427-9646422 Setaria italica
Seita.2G102400 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 9644423-9646422 Setaria italica
Seita.2G102400 2.0kb downstream 2.0kb downstream 2996 true scaffold_2: 9641427-9644422 Setaria italica
Seita.2G102400 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 9641427-9643426 Setaria italica
Seita.2G102400 5.0kb upstream 5.0kb upstream 5996 true scaffold_2: 9643427-9649422 Setaria italica
Seita.2G102400 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 9644423-9649422 Setaria italica
Seita.2G102400 5.0kb downstream 5.0kb downstream 5996 true scaffold_2: 9638427-9644422 Setaria italica
Seita.2G102400 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 9638427-9643426 Setaria italica
Seita.2G102400 10.0kb upstream 10.0kb upstream 10996 true scaffold_2: 9643427-9654422 Setaria italica
Seita.2G102400 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 9644423-9654422 Setaria italica
Seita.2G102400 10.0kb downstream 10.0kb downstream 10996 true scaffold_2: 9633427-9644422 Setaria italica
Seita.2G102400 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 9633427-9643426 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122186186 5267 Panicoideae View MSA
124579990 5269 Grass View MSA
122045066 5273 Angiosperm View MSA
121350373 5274 Embryophyte View MSA
123381702 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.055     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain