Gene : Seita.2G113900 S. italica v2.2
Defline:  (1 of 1) PTHR14499:SF11 - PROTEIN VM106R.1 Genomic Order:  1139
Name:  ? Seita.2G113900 Secondary Identifier:  ? PAC:32718662
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G113900 0.5kb upstream 0.5kb upstream 2256 true scaffold_2: 11209391-11211646 Setaria italica
Seita.2G113900 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 11209391-11209890 Setaria italica
Seita.2G113900 0.5kb downstream 0.5kb downstream 2256 true scaffold_2: 11209891-11212146 Setaria italica
Seita.2G113900 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 11211647-11212146 Setaria italica
Seita.2G113900 1.0kb upstream 1.0kb upstream 2756 true scaffold_2: 11208891-11211646 Setaria italica
Seita.2G113900 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 11208891-11209890 Setaria italica
Seita.2G113900 1.0kb downstream 1.0kb downstream 2756 true scaffold_2: 11209891-11212646 Setaria italica
Seita.2G113900 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 11211647-11212646 Setaria italica
Seita.2G113900 2.0kb upstream 2.0kb upstream 3756 true scaffold_2: 11207891-11211646 Setaria italica
Seita.2G113900 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 11207891-11209890 Setaria italica
Seita.2G113900 2.0kb downstream 2.0kb downstream 3756 true scaffold_2: 11209891-11213646 Setaria italica
Seita.2G113900 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 11211647-11213646 Setaria italica
Seita.2G113900 5.0kb upstream 5.0kb upstream 6756 true scaffold_2: 11204891-11211646 Setaria italica
Seita.2G113900 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 11204891-11209890 Setaria italica
Seita.2G113900 5.0kb downstream 5.0kb downstream 6756 true scaffold_2: 11209891-11216646 Setaria italica
Seita.2G113900 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 11211647-11216646 Setaria italica
Seita.2G113900 10.0kb upstream 10.0kb upstream 11756 true scaffold_2: 11199891-11211646 Setaria italica
Seita.2G113900 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 11199891-11209890 Setaria italica
Seita.2G113900 10.0kb downstream 10.0kb downstream 11756 true scaffold_2: 11209891-11221646 Setaria italica
Seita.2G113900 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 11211647-11221646 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122179133 5267 Panicoideae View MSA
124579559 5269 Grass View MSA
122042173 5273 Angiosperm View MSA
121348328 5274 Embryophyte View MSA
123380822 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.388        
cufflinks 8.369        
cufflinks 7.723        
cufflinks 6.326       Low
cufflinks 7.814        
cufflinks 8.671        
cufflinks 8.622        
cufflinks 11.224        
cufflinks 8.391        
cufflinks 5.527       Low
cufflinks 10.088        
cufflinks 14.628     High High
cufflinks 9.404        
cufflinks 8.685        
cufflinks 11.727        
cufflinks 7.486        
cufflinks 16.478     High High
cufflinks 8.538        
cufflinks 6.324       Low
cufflinks 13.473       High

0 Strain